Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3162 and Psest_3163 are separated by 86 nucleotides Psest_3163 and Psest_3164 are separated by 341 nucleotides
Psest_3162: Psest_3162 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 3,334,371 to 3,335,555
_3162
Psest_3163: Psest_3163 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 3,335,642 to 3,336,670
_3163
Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668
_3164
Position (kb)
3335
3336
3337 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3334.741 kb on + strand, within Psest_3162 at 3334.741 kb on + strand, within Psest_3162 at 3334.741 kb on + strand, within Psest_3162 at 3334.742 kb on - strand, within Psest_3162 at 3334.742 kb on - strand, within Psest_3162 at 3335.061 kb on + strand, within Psest_3162 at 3335.062 kb on - strand, within Psest_3162 at 3335.062 kb on - strand, within Psest_3162 at 3335.062 kb on - strand, within Psest_3162 at 3335.122 kb on + strand, within Psest_3162 at 3335.122 kb on + strand, within Psest_3162 at 3335.123 kb on - strand, within Psest_3162 at 3335.123 kb on - strand, within Psest_3162 at 3335.123 kb on - strand, within Psest_3162 at 3335.172 kb on - strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.173 kb on + strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.174 kb on - strand, within Psest_3162 at 3335.256 kb on + strand, within Psest_3162 at 3335.314 kb on + strand, within Psest_3162 at 3335.314 kb on + strand, within Psest_3162 at 3335.314 kb on + strand, within Psest_3162 at 3335.315 kb on - strand, within Psest_3162 at 3335.315 kb on - strand, within Psest_3162 at 3335.315 kb on - strand, within Psest_3162 at 3335.375 kb on + strand, within Psest_3162 at 3335.375 kb on + strand, within Psest_3162 at 3335.754 kb on + strand, within Psest_3163 at 3335.754 kb on + strand, within Psest_3163 at 3335.755 kb on - strand, within Psest_3163 at 3336.061 kb on - strand, within Psest_3163 at 3336.153 kb on + strand, within Psest_3163 at 3336.153 kb on + strand, within Psest_3163 at 3336.154 kb on - strand, within Psest_3163 at 3336.154 kb on - strand, within Psest_3163 at 3336.177 kb on + strand, within Psest_3163 at 3336.177 kb on + strand, within Psest_3163 at 3336.177 kb on + strand, within Psest_3163 at 3336.294 kb on + strand, within Psest_3163 at 3336.294 kb on + strand, within Psest_3163 at 3336.295 kb on - strand, within Psest_3163 at 3336.295 kb on - strand, within Psest_3163 at 3336.295 kb on - strand, within Psest_3163 at 3336.295 kb on - strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.297 kb on + strand, within Psest_3163 at 3336.298 kb on - strand, within Psest_3163 at 3336.355 kb on + strand, within Psest_3163 at 3336.355 kb on + strand, within Psest_3163 at 3336.356 kb on - strand, within Psest_3163 at 3336.356 kb on - strand, within Psest_3163 at 3336.356 kb on - strand, within Psest_3163 at 3336.356 kb on - strand, within Psest_3163 at 3336.356 kb on - strand, within Psest_3163 at 3336.427 kb on - strand, within Psest_3163 at 3336.427 kb on - strand, within Psest_3163 at 3336.427 kb on - strand, within Psest_3163 at 3336.427 kb on - strand, within Psest_3163 at 3336.427 kb on - strand, within Psest_3163 at 3336.693 kb on + strand at 3336.768 kb on - strand at 3336.777 kb on + strand at 3336.777 kb on + strand at 3336.777 kb on + strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.778 kb on - strand at 3336.913 kb on + strand at 3337.214 kb on - strand, within Psest_3164 at 3337.214 kb on - strand, within Psest_3164 at 3337.432 kb on + strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.433 kb on - strand, within Psest_3164 at 3337.523 kb on + strand, within Psest_3164 at 3337.524 kb on - strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.559 kb on + strand, within Psest_3164 at 3337.560 kb on - strand, within Psest_3164
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,334,741 + Psest_3162 0.31 -1.9 3,334,741 + Psest_3162 0.31 +0.4 3,334,741 + Psest_3162 0.31 +0.3 3,334,742 - Psest_3162 0.31 -0.6 3,334,742 - Psest_3162 0.31 -2.8 3,335,061 + Psest_3162 0.58 -0.1 3,335,062 - Psest_3162 0.58 -1.6 3,335,062 - Psest_3162 0.58 -0.3 3,335,062 - Psest_3162 0.58 -0.7 3,335,122 + Psest_3162 0.63 +0.1 3,335,122 + Psest_3162 0.63 -0.2 3,335,123 - Psest_3162 0.63 +0.6 3,335,123 - Psest_3162 0.63 +1.2 3,335,123 - Psest_3162 0.63 -2.2 3,335,172 - Psest_3162 0.68 -1.7 3,335,173 + Psest_3162 0.68 -1.8 3,335,173 + Psest_3162 0.68 -1.4 3,335,173 + Psest_3162 0.68 -1.0 3,335,173 + Psest_3162 0.68 +2.0 3,335,173 + Psest_3162 0.68 -3.5 3,335,173 + Psest_3162 0.68 -0.2 3,335,173 + Psest_3162 0.68 -3.4 3,335,174 - Psest_3162 0.68 -1.6 3,335,174 - Psest_3162 0.68 -2.6 3,335,174 - Psest_3162 0.68 -3.6 3,335,174 - Psest_3162 0.68 -0.9 3,335,174 - Psest_3162 0.68 +1.3 3,335,174 - Psest_3162 0.68 -0.7 3,335,256 + Psest_3162 0.75 -2.5 3,335,314 + Psest_3162 0.80 +0.3 3,335,314 + Psest_3162 0.80 -1.4 3,335,314 + Psest_3162 0.80 -0.4 3,335,315 - Psest_3162 0.80 -2.7 3,335,315 - Psest_3162 0.80 -0.9 3,335,315 - Psest_3162 0.80 -2.1 3,335,375 + Psest_3162 0.85 -2.2 3,335,375 + Psest_3162 0.85 -1.1 3,335,754 + Psest_3163 0.11 -2.6 3,335,754 + Psest_3163 0.11 -0.7 3,335,755 - Psest_3163 0.11 -0.8 3,336,061 - Psest_3163 0.41 -1.5 3,336,153 + Psest_3163 0.50 -1.6 3,336,153 + Psest_3163 0.50 +0.9 3,336,154 - Psest_3163 0.50 -0.1 3,336,154 - Psest_3163 0.50 -0.0 3,336,177 + Psest_3163 0.52 +0.6 3,336,177 + Psest_3163 0.52 -2.2 3,336,177 + Psest_3163 0.52 -1.4 3,336,294 + Psest_3163 0.63 -1.0 3,336,294 + Psest_3163 0.63 +1.3 3,336,295 - Psest_3163 0.63 -1.7 3,336,295 - Psest_3163 0.63 -2.1 3,336,295 - Psest_3163 0.63 +0.6 3,336,295 - Psest_3163 0.63 -2.0 3,336,297 + Psest_3163 0.64 -3.1 3,336,297 + Psest_3163 0.64 -1.3 3,336,297 + Psest_3163 0.64 -1.6 3,336,297 + Psest_3163 0.64 -1.7 3,336,297 + Psest_3163 0.64 -1.9 3,336,297 + Psest_3163 0.64 -3.2 3,336,298 - Psest_3163 0.64 +0.3 3,336,355 + Psest_3163 0.69 -0.7 3,336,355 + Psest_3163 0.69 -1.5 3,336,356 - Psest_3163 0.69 -1.1 3,336,356 - Psest_3163 0.69 -0.1 3,336,356 - Psest_3163 0.69 -3.1 3,336,356 - Psest_3163 0.69 -2.8 3,336,356 - Psest_3163 0.69 -0.4 3,336,427 - Psest_3163 0.76 -2.2 3,336,427 - Psest_3163 0.76 -1.9 3,336,427 - Psest_3163 0.76 -0.1 3,336,427 - Psest_3163 0.76 -1.3 3,336,427 - Psest_3163 0.76 -0.8 3,336,693 + -2.0 3,336,768 - -0.4 3,336,777 + +1.3 3,336,777 + -0.3 3,336,777 + +1.0 3,336,778 - -1.9 3,336,778 - -2.0 3,336,778 - -2.2 3,336,778 - +0.0 3,336,778 - +1.6 3,336,778 - -0.9 3,336,778 - -2.4 3,336,913 + -0.6 3,337,214 - Psest_3164 0.31 +0.0 3,337,214 - Psest_3164 0.31 -0.6 3,337,432 + Psest_3164 0.64 -1.1 3,337,433 - Psest_3164 0.64 +0.4 3,337,433 - Psest_3164 0.64 -0.1 3,337,433 - Psest_3164 0.64 -2.1 3,337,433 - Psest_3164 0.64 +0.6 3,337,523 + Psest_3164 0.78 +0.7 3,337,524 - Psest_3164 0.78 +0.2 3,337,559 + Psest_3164 0.83 +0.1 3,337,559 + Psest_3164 0.83 -0.7 3,337,559 + Psest_3164 0.83 -0.1 3,337,559 + Psest_3164 0.83 -0.3 3,337,560 - Psest_3164 0.83 -0.1
Or see this region's nucleotide sequence