Strain Fitness in Marinobacter adhaerens HP15 around HP15_2951

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2949 and HP15_2950 are separated by 43 nucleotidesHP15_2950 and HP15_2951 are separated by 28 nucleotidesHP15_2951 and HP15_2952 are separated by 177 nucleotides HP15_2949: HP15_2949 - fatty acid desaturase, at 3,092,258 to 3,093,337 _2949 HP15_2950: HP15_2950 - transcriptional regulator, BadM/Rrf2 family, at 3,093,381 to 3,093,818 _2950 HP15_2951: HP15_2951 - membrane protein containing DUF454, at 3,093,847 to 3,094,215 _2951 HP15_2952: HP15_2952 - molybdenum cofactor biosynthesis protein A, at 3,094,393 to 3,095,385 _2952 Position (kb) 3093 3094 3095Strain fitness (log2 ratio) -2 -1 0 1 2at 3092.940 kb on - strand, within HP15_2949at 3093.176 kb on - strand, within HP15_2949at 3093.202 kb on + strand, within HP15_2949at 3093.210 kb on - strand, within HP15_2949at 3093.223 kb on + strand, within HP15_2949at 3093.223 kb on + strand, within HP15_2949at 3093.224 kb on - strand, within HP15_2949at 3093.238 kb on - strandat 3093.241 kb on - strandat 3093.262 kb on + strandat 3093.262 kb on + strandat 3093.270 kb on - strandat 3093.274 kb on + strandat 3093.322 kb on + strandat 3093.330 kb on - strandat 3093.415 kb on - strandat 3093.420 kb on - strandat 3093.566 kb on - strand, within HP15_2950at 3093.597 kb on + strand, within HP15_2950at 3093.618 kb on + strand, within HP15_2950at 3093.623 kb on + strand, within HP15_2950at 3093.626 kb on - strand, within HP15_2950at 3093.626 kb on - strand, within HP15_2950at 3093.756 kb on + strand, within HP15_2950at 3093.756 kb on + strand, within HP15_2950at 3093.756 kb on + strand, within HP15_2950at 3093.764 kb on - strand, within HP15_2950at 3093.960 kb on + strand, within HP15_2951at 3094.015 kb on + strand, within HP15_2951at 3094.028 kb on - strand, within HP15_2951at 3094.050 kb on + strand, within HP15_2951at 3094.222 kb on + strandat 3094.230 kb on - strandat 3094.292 kb on + strandat 3094.300 kb on - strandat 3094.300 kb on - strandat 3094.482 kb on + strandat 3094.485 kb on + strandat 3094.505 kb on - strand, within HP15_2952at 3094.533 kb on - strand, within HP15_2952at 3094.628 kb on + strand, within HP15_2952at 3094.638 kb on + strand, within HP15_2952at 3094.753 kb on + strand, within HP15_2952at 3094.816 kb on + strand, within HP15_2952at 3094.834 kb on - strand, within HP15_2952at 3094.845 kb on - strand, within HP15_2952at 3094.874 kb on - strand, within HP15_2952at 3094.917 kb on + strand, within HP15_2952at 3095.008 kb on - strand, within HP15_2952at 3095.042 kb on - strand, within HP15_2952at 3095.175 kb on + strand, within HP15_2952

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,092,940 - HP15_2949 0.63 +0.7
3,093,176 - HP15_2949 0.85 -1.2
3,093,202 + HP15_2949 0.87 +2.2
3,093,210 - HP15_2949 0.88 -0.5
3,093,223 + HP15_2949 0.89 -0.7
3,093,223 + HP15_2949 0.89 -0.3
3,093,224 - HP15_2949 0.89 +0.9
3,093,238 - -0.3
3,093,241 - -0.5
3,093,262 + -0.2
3,093,262 + -1.4
3,093,270 - +0.9
3,093,274 + +0.2
3,093,322 + +1.1
3,093,330 - -0.9
3,093,415 - +1.8
3,093,420 - +0.3
3,093,566 - HP15_2950 0.42 +0.9
3,093,597 + HP15_2950 0.49 +1.2
3,093,618 + HP15_2950 0.54 +0.8
3,093,623 + HP15_2950 0.55 +0.4
3,093,626 - HP15_2950 0.56 +0.2
3,093,626 - HP15_2950 0.56 +0.4
3,093,756 + HP15_2950 0.86 +0.3
3,093,756 + HP15_2950 0.86 +1.0
3,093,756 + HP15_2950 0.86 +0.0
3,093,764 - HP15_2950 0.87 -0.1
3,093,960 + HP15_2951 0.31 -0.3
3,094,015 + HP15_2951 0.46 +0.2
3,094,028 - HP15_2951 0.49 +0.3
3,094,050 + HP15_2951 0.55 +0.0
3,094,222 + -0.7
3,094,230 - -0.2
3,094,292 + -0.6
3,094,300 - +0.0
3,094,300 - -1.0
3,094,482 + -0.6
3,094,485 + -2.0
3,094,505 - HP15_2952 0.11 +0.1
3,094,533 - HP15_2952 0.14 -1.0
3,094,628 + HP15_2952 0.24 -1.3
3,094,638 + HP15_2952 0.25 -1.2
3,094,753 + HP15_2952 0.36 +0.1
3,094,816 + HP15_2952 0.43 -1.8
3,094,834 - HP15_2952 0.44 -1.9
3,094,845 - HP15_2952 0.46 -0.5
3,094,874 - HP15_2952 0.48 -1.9
3,094,917 + HP15_2952 0.53 -0.3
3,095,008 - HP15_2952 0.62 -0.4
3,095,042 - HP15_2952 0.65 -2.4
3,095,175 + HP15_2952 0.79 +0.1

Or see this region's nucleotide sequence