Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2765

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2763 and Psest_2764 overlap by 22 nucleotidesPsest_2764 and Psest_2765 are separated by 86 nucleotidesPsest_2765 and Psest_2766 are separated by 162 nucleotidesPsest_2766 and Psest_2767 are separated by 5 nucleotides Psest_2763: Psest_2763 - Cellobiose phosphorylase, at 2,951,266 to 2,959,797 _2763 Psest_2764: Psest_2764 - hypothetical protein, at 2,959,776 to 2,959,889 _2764 Psest_2765: Psest_2765 - Collagenase and related proteases, at 2,959,976 to 2,961,976 _2765 Psest_2766: Psest_2766 - hypothetical protein, at 2,962,139 to 2,962,735 _2766 Psest_2767: Psest_2767 - Uncharacterized conserved protein, at 2,962,741 to 2,963,472 _2767 Position (kb) 2959 2960 2961 2962Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2959.258 kb on + strandat 2959.259 kb on - strandat 2959.259 kb on - strandat 2959.303 kb on + strandat 2959.304 kb on - strandat 2959.429 kb on + strandat 2959.429 kb on + strandat 2959.429 kb on + strandat 2959.445 kb on - strandat 2959.466 kb on - strandat 2959.507 kb on + strandat 2959.507 kb on + strandat 2959.508 kb on - strandat 2959.795 kb on + strandat 2959.795 kb on + strandat 2959.796 kb on - strandat 2959.822 kb on + strand, within Psest_2764at 2959.870 kb on + strand, within Psest_2764at 2959.937 kb on + strandat 2960.069 kb on + strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.070 kb on - strandat 2960.240 kb on + strand, within Psest_2765at 2960.241 kb on - strand, within Psest_2765at 2960.241 kb on - strand, within Psest_2765at 2960.709 kb on - strand, within Psest_2765at 2960.709 kb on - strand, within Psest_2765at 2960.723 kb on + strand, within Psest_2765at 2960.723 kb on + strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.724 kb on - strand, within Psest_2765at 2960.744 kb on + strand, within Psest_2765at 2960.744 kb on + strand, within Psest_2765at 2960.745 kb on - strand, within Psest_2765at 2960.747 kb on + strand, within Psest_2765at 2960.871 kb on - strand, within Psest_2765at 2961.404 kb on + strand, within Psest_2765at 2961.404 kb on + strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.405 kb on - strand, within Psest_2765at 2961.593 kb on + strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.594 kb on - strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.602 kb on + strand, within Psest_2765at 2961.603 kb on - strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.626 kb on + strand, within Psest_2765at 2961.627 kb on - strand, within Psest_2765at 2961.627 kb on - strand, within Psest_2765at 2961.882 kb on + strandat 2961.882 kb on + strandat 2961.883 kb on - strandat 2961.883 kb on - strandat 2961.883 kb on - strandat 2962.059 kb on + strandat 2962.419 kb on + strand, within Psest_2766at 2962.886 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.898 kb on + strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.899 kb on - strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.902 kb on + strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767at 2962.903 kb on - strand, within Psest_2767

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,959,258 + +0.6
2,959,259 - -0.4
2,959,259 - +1.6
2,959,303 + -1.6
2,959,304 - -0.3
2,959,429 + -1.9
2,959,429 + -0.1
2,959,429 + +0.1
2,959,445 - +0.3
2,959,466 - -1.4
2,959,507 + +1.4
2,959,507 + +0.2
2,959,508 - -1.9
2,959,795 + +1.0
2,959,795 + -0.6
2,959,796 - -0.6
2,959,822 + Psest_2764 0.40 -1.0
2,959,870 + Psest_2764 0.82 -1.3
2,959,937 + +0.0
2,960,069 + -1.6
2,960,070 - -1.7
2,960,070 - -1.8
2,960,070 - -0.6
2,960,070 - -2.8
2,960,070 - -2.1
2,960,070 - -1.4
2,960,070 - -2.8
2,960,070 - +2.1
2,960,070 - -0.8
2,960,240 + Psest_2765 0.13 -1.9
2,960,241 - Psest_2765 0.13 -0.6
2,960,241 - Psest_2765 0.13 -0.0
2,960,709 - Psest_2765 0.37 +1.2
2,960,709 - Psest_2765 0.37 +0.4
2,960,723 + Psest_2765 0.37 -1.3
2,960,723 + Psest_2765 0.37 -0.1
2,960,724 - Psest_2765 0.37 +0.6
2,960,724 - Psest_2765 0.37 -0.4
2,960,724 - Psest_2765 0.37 +0.6
2,960,724 - Psest_2765 0.37 -0.8
2,960,744 + Psest_2765 0.38 -1.0
2,960,744 + Psest_2765 0.38 -1.0
2,960,745 - Psest_2765 0.38 -1.1
2,960,747 + Psest_2765 0.39 +0.2
2,960,871 - Psest_2765 0.45 +0.2
2,961,404 + Psest_2765 0.71 -1.0
2,961,404 + Psest_2765 0.71 -0.0
2,961,405 - Psest_2765 0.71 +0.1
2,961,405 - Psest_2765 0.71 -0.4
2,961,405 - Psest_2765 0.71 -0.8
2,961,593 + Psest_2765 0.81 +0.1
2,961,594 - Psest_2765 0.81 -2.2
2,961,594 - Psest_2765 0.81 -0.3
2,961,594 - Psest_2765 0.81 -1.4
2,961,602 + Psest_2765 0.81 -1.3
2,961,602 + Psest_2765 0.81 -4.5
2,961,602 + Psest_2765 0.81 -1.6
2,961,603 - Psest_2765 0.81 -0.8
2,961,626 + Psest_2765 0.82 -0.7
2,961,626 + Psest_2765 0.82 -0.0
2,961,626 + Psest_2765 0.82 +1.1
2,961,626 + Psest_2765 0.82 +0.6
2,961,626 + Psest_2765 0.82 -0.1
2,961,627 - Psest_2765 0.83 -1.4
2,961,627 - Psest_2765 0.83 -1.0
2,961,882 + +0.2
2,961,882 + +0.3
2,961,883 - -0.8
2,961,883 - +2.0
2,961,883 - -1.0
2,962,059 + -2.2
2,962,419 + Psest_2766 0.47 -1.7
2,962,886 + Psest_2767 0.20 -2.2
2,962,898 + Psest_2767 0.21 -0.0
2,962,898 + Psest_2767 0.21 -0.0
2,962,898 + Psest_2767 0.21 -0.4
2,962,898 + Psest_2767 0.21 -0.7
2,962,899 - Psest_2767 0.22 -0.4
2,962,899 - Psest_2767 0.22 -0.8
2,962,902 + Psest_2767 0.22 -1.0
2,962,902 + Psest_2767 0.22 +0.6
2,962,902 + Psest_2767 0.22 +0.8
2,962,902 + Psest_2767 0.22 +2.2
2,962,902 + Psest_2767 0.22 +1.8
2,962,902 + Psest_2767 0.22 -0.2
2,962,902 + Psest_2767 0.22 -1.1
2,962,902 + Psest_2767 0.22 +0.6
2,962,902 + Psest_2767 0.22 +0.3
2,962,902 + Psest_2767 0.22 -0.2
2,962,902 + Psest_2767 0.22 -0.0
2,962,902 + Psest_2767 0.22 -0.2
2,962,902 + Psest_2767 0.22 -0.2
2,962,902 + Psest_2767 0.22 -0.3
2,962,902 + Psest_2767 0.22 -0.2
2,962,903 - Psest_2767 0.22 +0.9
2,962,903 - Psest_2767 0.22 -2.3
2,962,903 - Psest_2767 0.22 -2.5
2,962,903 - Psest_2767 0.22 -3.6

Or see this region's nucleotide sequence