Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2595 and HP15_2596 are separated by 20 nucleotides HP15_2596 and HP15_2597 are separated by 76 nucleotides HP15_2597 and HP15_2598 are separated by 18 nucleotides HP15_2598 and HP15_2599 are separated by 1 nucleotides
HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585
_2595
HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923
_2596
HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904
_2597
HP15_2598: HP15_2598 - isopropylmalate isomerase small subunit, at 2,746,923 to 2,747,558
_2598
HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969
_2599
Position (kb)
2744
2745
2746
2747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2744.075 kb on + strand, within HP15_2595 at 2744.116 kb on - strand, within HP15_2595 at 2744.134 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.234 kb on + strand, within HP15_2595 at 2744.338 kb on - strand, within HP15_2595 at 2744.397 kb on + strand, within HP15_2595 at 2744.407 kb on + strand, within HP15_2595 at 2744.415 kb on - strand, within HP15_2595 at 2744.421 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.434 kb on - strand at 2744.439 kb on - strand at 2744.450 kb on - strand at 2744.612 kb on - strand at 2744.661 kb on - strand, within HP15_2596 at 2744.688 kb on + strand, within HP15_2596 at 2744.791 kb on + strand, within HP15_2596 at 2744.879 kb on - strand, within HP15_2596 at 2745.023 kb on - strand at 2745.115 kb on + strand at 2745.168 kb on - strand at 2745.168 kb on - strand at 2745.203 kb on - strand, within HP15_2597 at 2745.277 kb on + strand, within HP15_2597 at 2745.399 kb on - strand, within HP15_2597 at 2745.424 kb on - strand, within HP15_2597 at 2745.516 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.591 kb on - strand, within HP15_2597 at 2745.648 kb on - strand, within HP15_2597 at 2745.669 kb on - strand, within HP15_2597 at 2745.748 kb on - strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.875 kb on + strand, within HP15_2597 at 2745.881 kb on - strand, within HP15_2597 at 2745.900 kb on + strand, within HP15_2597 at 2745.917 kb on + strand, within HP15_2597 at 2745.933 kb on - strand, within HP15_2597 at 2746.000 kb on + strand, within HP15_2597 at 2746.085 kb on - strand, within HP15_2597 at 2746.087 kb on - strand, within HP15_2597 at 2746.092 kb on - strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.286 kb on + strand, within HP15_2597 at 2746.307 kb on - strand, within HP15_2597 at 2746.442 kb on + strand, within HP15_2597 at 2746.477 kb on + strand, within HP15_2597 at 2746.549 kb on + strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.557 kb on + strand, within HP15_2597 at 2746.565 kb on + strand, within HP15_2597 at 2746.573 kb on - strand, within HP15_2597 at 2746.644 kb on + strand, within HP15_2597 at 2746.729 kb on + strand at 2746.752 kb on + strand at 2746.758 kb on - strand at 2746.849 kb on - strand at 2746.940 kb on + strand at 2746.963 kb on + strand at 2747.005 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.119 kb on - strand, within HP15_2598 at 2747.311 kb on - strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.342 kb on - strand, within HP15_2598 at 2747.389 kb on + strand, within HP15_2598 at 2747.449 kb on - strand, within HP15_2598 at 2747.489 kb on - strand, within HP15_2598 at 2747.494 kb on - strand, within HP15_2598 at 2747.499 kb on + strand at 2747.521 kb on + strand at 2747.552 kb on + strand at 2747.642 kb on + strand at 2747.642 kb on + strand at 2747.650 kb on - strand at 2747.699 kb on + strand at 2747.707 kb on - strand, within HP15_2599 at 2747.834 kb on + strand, within HP15_2599
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,744,075 + HP15_2595 0.69 -0.2 2,744,116 - HP15_2595 0.71 +0.3 2,744,134 + HP15_2595 0.73 +3.4 2,744,183 + HP15_2595 0.75 +0.3 2,744,183 + HP15_2595 0.75 -0.7 2,744,234 + HP15_2595 0.79 +0.7 2,744,338 - HP15_2595 0.85 +0.7 2,744,397 + HP15_2595 0.89 +0.1 2,744,407 + HP15_2595 0.89 -0.8 2,744,415 - HP15_2595 0.90 +1.4 2,744,421 + +0.5 2,744,431 + +0.5 2,744,431 + +0.2 2,744,431 + +0.2 2,744,434 - +0.5 2,744,439 - +0.4 2,744,450 - +0.5 2,744,612 - -0.2 2,744,661 - HP15_2596 0.17 +0.8 2,744,688 + HP15_2596 0.26 -0.6 2,744,791 + HP15_2596 0.58 +0.3 2,744,879 - HP15_2596 0.86 -0.5 2,745,023 - +0.4 2,745,115 + +0.2 2,745,168 - +0.3 2,745,168 - +0.7 2,745,203 - HP15_2597 0.11 -0.2 2,745,277 + HP15_2597 0.15 -0.7 2,745,399 - HP15_2597 0.21 -0.4 2,745,424 - HP15_2597 0.22 -3.7 2,745,516 + HP15_2597 0.27 -0.8 2,745,526 + HP15_2597 0.28 -0.2 2,745,526 + HP15_2597 0.28 -0.3 2,745,591 - HP15_2597 0.31 -0.5 2,745,648 - HP15_2597 0.34 +0.6 2,745,669 - HP15_2597 0.35 -2.6 2,745,748 - HP15_2597 0.39 -0.1 2,745,873 + HP15_2597 0.46 -0.9 2,745,873 + HP15_2597 0.46 -0.8 2,745,875 + HP15_2597 0.46 +0.3 2,745,881 - HP15_2597 0.46 -0.1 2,745,900 + HP15_2597 0.47 -0.7 2,745,917 + HP15_2597 0.48 +0.6 2,745,933 - HP15_2597 0.49 -1.0 2,746,000 + HP15_2597 0.52 +0.6 2,746,085 - HP15_2597 0.57 -0.8 2,746,087 - HP15_2597 0.57 -2.0 2,746,092 - HP15_2597 0.57 -0.7 2,746,227 + HP15_2597 0.64 -1.3 2,746,227 + HP15_2597 0.64 -0.3 2,746,286 + HP15_2597 0.68 -1.4 2,746,307 - HP15_2597 0.69 +0.2 2,746,442 + HP15_2597 0.76 +0.2 2,746,477 + HP15_2597 0.78 +0.5 2,746,549 + HP15_2597 0.81 +0.5 2,746,552 - HP15_2597 0.81 -0.6 2,746,552 - HP15_2597 0.81 +0.7 2,746,557 + HP15_2597 0.82 -1.4 2,746,565 + HP15_2597 0.82 -0.5 2,746,573 - HP15_2597 0.83 -0.4 2,746,644 + HP15_2597 0.86 -0.7 2,746,729 + -0.5 2,746,752 + -0.4 2,746,758 - +0.9 2,746,849 - +0.6 2,746,940 + +0.2 2,746,963 + +0.3 2,747,005 + HP15_2598 0.13 -0.5 2,747,111 + HP15_2598 0.30 +0.0 2,747,111 + HP15_2598 0.30 -0.5 2,747,111 + HP15_2598 0.30 +1.9 2,747,119 - HP15_2598 0.31 +0.1 2,747,311 - HP15_2598 0.61 +0.1 2,747,334 + HP15_2598 0.65 -1.2 2,747,334 + HP15_2598 0.65 -0.6 2,747,342 - HP15_2598 0.66 +0.9 2,747,389 + HP15_2598 0.73 -0.5 2,747,449 - HP15_2598 0.83 +0.1 2,747,489 - HP15_2598 0.89 +0.1 2,747,494 - HP15_2598 0.90 +0.0 2,747,499 + -0.5 2,747,521 + +0.3 2,747,552 + +0.8 2,747,642 + +0.5 2,747,642 + +0.5 2,747,650 - +0.3 2,747,699 + -0.9 2,747,707 - HP15_2599 0.10 +0.3 2,747,834 + HP15_2599 0.19 -0.4
Or see this region's nucleotide sequence