Strain Fitness in Marinobacter adhaerens HP15 around HP15_2538

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2537 and HP15_2538 are separated by 10 nucleotidesHP15_2538 and HP15_2540 are separated by 143 nucleotidesHP15_2540 and HP15_2539 overlap by 21 nucleotides HP15_2537: HP15_2537 - oxidoreductase, short-chain dehydrogenase/reductase family, at 2,681,919 to 2,682,785 _2537 HP15_2538: HP15_2538 - acetyl/propionyl-CoA carboxylase beta subunit, at 2,682,796 to 2,684,412 _2538 HP15_2540: HP15_2540 - hypothetical protein, at 2,684,556 to 2,684,810 _2540 HP15_2539: HP15_2539 - acyl-CoA dehydrogenase domain protein, at 2,684,790 to 2,685,950 _2539 Position (kb) 2682 2683 2684 2685Strain fitness (log2 ratio) -2 -1 0 1 2at 2681.797 kb on - strandat 2681.797 kb on - strandat 2681.854 kb on - strandat 2681.907 kb on - strandat 2681.959 kb on - strandat 2682.045 kb on - strand, within HP15_2537at 2682.134 kb on - strand, within HP15_2537at 2682.138 kb on + strand, within HP15_2537at 2682.168 kb on - strand, within HP15_2537at 2682.189 kb on + strand, within HP15_2537at 2682.258 kb on + strand, within HP15_2537at 2682.258 kb on + strand, within HP15_2537at 2682.282 kb on + strand, within HP15_2537at 2682.306 kb on + strand, within HP15_2537at 2682.399 kb on - strand, within HP15_2537at 2682.423 kb on - strand, within HP15_2537at 2682.453 kb on + strand, within HP15_2537at 2682.631 kb on + strand, within HP15_2537at 2682.642 kb on + strand, within HP15_2537at 2682.699 kb on - strandat 2682.699 kb on - strandat 2682.706 kb on - strandat 2682.717 kb on + strandat 2682.732 kb on + strandat 2682.750 kb on - strandat 2682.909 kb on - strandat 2682.945 kb on + strandat 2682.954 kb on + strandat 2682.976 kb on - strand, within HP15_2538at 2683.025 kb on + strand, within HP15_2538at 2683.117 kb on - strand, within HP15_2538at 2683.167 kb on + strand, within HP15_2538at 2683.425 kb on - strand, within HP15_2538at 2683.425 kb on - strand, within HP15_2538at 2683.436 kb on + strand, within HP15_2538at 2683.444 kb on - strand, within HP15_2538at 2683.501 kb on - strand, within HP15_2538at 2683.593 kb on - strand, within HP15_2538at 2683.700 kb on - strand, within HP15_2538at 2683.773 kb on + strand, within HP15_2538at 2683.862 kb on - strand, within HP15_2538at 2683.928 kb on + strand, within HP15_2538at 2683.959 kb on - strand, within HP15_2538at 2684.221 kb on - strand, within HP15_2538at 2684.222 kb on + strand, within HP15_2538at 2684.227 kb on + strand, within HP15_2538at 2684.271 kb on + strandat 2684.279 kb on - strandat 2684.537 kb on + strandat 2684.810 kb on - strandat 2684.978 kb on + strand, within HP15_2539at 2684.986 kb on - strand, within HP15_2539at 2685.067 kb on + strand, within HP15_2539at 2685.244 kb on + strand, within HP15_2539at 2685.389 kb on - strand, within HP15_2539

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,681,797 - -0.3
2,681,797 - +1.0
2,681,854 - -0.2
2,681,907 - -1.4
2,681,959 - -0.0
2,682,045 - HP15_2537 0.15 -0.7
2,682,134 - HP15_2537 0.25 -0.3
2,682,138 + HP15_2537 0.25 -0.2
2,682,168 - HP15_2537 0.29 -1.0
2,682,189 + HP15_2537 0.31 -0.0
2,682,258 + HP15_2537 0.39 -0.6
2,682,258 + HP15_2537 0.39 -0.2
2,682,282 + HP15_2537 0.42 -0.4
2,682,306 + HP15_2537 0.45 -0.2
2,682,399 - HP15_2537 0.55 -1.0
2,682,423 - HP15_2537 0.58 +0.5
2,682,453 + HP15_2537 0.62 +0.3
2,682,631 + HP15_2537 0.82 +0.8
2,682,642 + HP15_2537 0.83 -1.0
2,682,699 - +0.7
2,682,699 - +0.1
2,682,706 - -0.2
2,682,717 + +0.1
2,682,732 + -0.3
2,682,750 - -0.7
2,682,909 - -0.7
2,682,945 + +0.1
2,682,954 + +0.3
2,682,976 - HP15_2538 0.11 +0.1
2,683,025 + HP15_2538 0.14 +0.2
2,683,117 - HP15_2538 0.20 -0.7
2,683,167 + HP15_2538 0.23 +0.0
2,683,425 - HP15_2538 0.39 -1.0
2,683,425 - HP15_2538 0.39 +0.0
2,683,436 + HP15_2538 0.40 +0.4
2,683,444 - HP15_2538 0.40 -1.9
2,683,501 - HP15_2538 0.44 +0.0
2,683,593 - HP15_2538 0.49 +0.2
2,683,700 - HP15_2538 0.56 -1.2
2,683,773 + HP15_2538 0.60 -0.0
2,683,862 - HP15_2538 0.66 -0.4
2,683,928 + HP15_2538 0.70 -0.9
2,683,959 - HP15_2538 0.72 -0.8
2,684,221 - HP15_2538 0.88 -0.2
2,684,222 + HP15_2538 0.88 -0.6
2,684,227 + HP15_2538 0.88 +0.2
2,684,271 + -0.8
2,684,279 - +1.1
2,684,537 + +1.9
2,684,810 - +0.5
2,684,978 + HP15_2539 0.16 -1.0
2,684,986 - HP15_2539 0.17 +0.1
2,685,067 + HP15_2539 0.24 -0.6
2,685,244 + HP15_2539 0.39 +0.4
2,685,389 - HP15_2539 0.52 +0.3

Or see this region's nucleotide sequence