Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2631 and Psest_2632 are separated by 144 nucleotides Psest_2632 and Psest_2633 are separated by 115 nucleotides
Psest_2631: Psest_2631 - AraC-type DNA-binding domain-containing proteins, at 2,811,644 to 2,812,516
_2631
Psest_2632: Psest_2632 - ribosomal protein S12 methylthiotransferase RimO, at 2,812,661 to 2,813,983
_2632
Psest_2633: Psest_2633 - choline dehydrogenase, at 2,814,099 to 2,815,772
_2633
Position (kb)
2812
2813
2814 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2811.706 kb on + strand at 2811.790 kb on - strand, within Psest_2631 at 2811.790 kb on - strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.962 kb on + strand, within Psest_2631 at 2811.963 kb on - strand, within Psest_2631 at 2811.963 kb on - strand, within Psest_2631 at 2811.963 kb on - strand, within Psest_2631 at 2811.963 kb on - strand, within Psest_2631 at 2811.963 kb on - strand, within Psest_2631 at 2812.254 kb on - strand, within Psest_2631 at 2812.265 kb on + strand, within Psest_2631 at 2812.266 kb on - strand, within Psest_2631 at 2812.349 kb on + strand, within Psest_2631 at 2812.376 kb on + strand, within Psest_2631 at 2812.376 kb on + strand, within Psest_2631 at 2812.376 kb on + strand, within Psest_2631 at 2812.377 kb on - strand, within Psest_2631 at 2812.500 kb on - strand at 2812.563 kb on + strand at 2812.614 kb on + strand at 2812.615 kb on - strand at 2812.968 kb on - strand, within Psest_2632 at 2813.082 kb on - strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.110 kb on + strand, within Psest_2632 at 2813.111 kb on - strand, within Psest_2632 at 2813.111 kb on - strand, within Psest_2632 at 2813.111 kb on - strand, within Psest_2632 at 2813.111 kb on - strand, within Psest_2632 at 2813.267 kb on + strand, within Psest_2632 at 2813.267 kb on + strand, within Psest_2632 at 2813.268 kb on - strand, within Psest_2632 at 2813.268 kb on - strand, within Psest_2632 at 2813.268 kb on - strand, within Psest_2632 at 2813.363 kb on + strand, within Psest_2632 at 2813.364 kb on - strand, within Psest_2632 at 2813.370 kb on - strand, within Psest_2632 at 2813.606 kb on + strand, within Psest_2632 at 2813.888 kb on + strand at 2813.889 kb on - strand at 2813.935 kb on - strand at 2814.142 kb on + strand at 2814.142 kb on + strand at 2814.142 kb on + strand at 2814.143 kb on - strand at 2814.143 kb on - strand at 2814.143 kb on - strand at 2814.145 kb on + strand at 2814.146 kb on - strand at 2814.146 kb on - strand at 2814.146 kb on - strand at 2814.212 kb on + strand at 2814.213 kb on - strand at 2814.535 kb on + strand, within Psest_2633 at 2814.535 kb on + strand, within Psest_2633 at 2814.535 kb on + strand, within Psest_2633 at 2814.535 kb on + strand, within Psest_2633 at 2814.535 kb on + strand, within Psest_2633 at 2814.535 kb on + strand, within Psest_2633 at 2814.536 kb on - strand, within Psest_2633 at 2814.536 kb on - strand, within Psest_2633 at 2814.664 kb on + strand, within Psest_2633 at 2814.664 kb on + strand, within Psest_2633 at 2814.860 kb on - strand, within Psest_2633 at 2814.868 kb on + strand, within Psest_2633 at 2814.868 kb on + strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,811,706 + -1.3 2,811,790 - Psest_2631 0.17 -0.1 2,811,790 - Psest_2631 0.17 -0.5 2,811,962 + Psest_2631 0.36 -0.5 2,811,962 + Psest_2631 0.36 +0.5 2,811,962 + Psest_2631 0.36 -3.4 2,811,962 + Psest_2631 0.36 +0.1 2,811,962 + Psest_2631 0.36 +2.2 2,811,962 + Psest_2631 0.36 -1.2 2,811,963 - Psest_2631 0.37 -1.7 2,811,963 - Psest_2631 0.37 +1.5 2,811,963 - Psest_2631 0.37 +1.0 2,811,963 - Psest_2631 0.37 -2.5 2,811,963 - Psest_2631 0.37 -1.0 2,812,254 - Psest_2631 0.70 -0.8 2,812,265 + Psest_2631 0.71 -1.4 2,812,266 - Psest_2631 0.71 -2.1 2,812,349 + Psest_2631 0.81 -0.9 2,812,376 + Psest_2631 0.84 +0.5 2,812,376 + Psest_2631 0.84 -2.5 2,812,376 + Psest_2631 0.84 -2.4 2,812,377 - Psest_2631 0.84 -0.6 2,812,500 - +0.9 2,812,563 + -1.5 2,812,614 + -0.9 2,812,615 - +1.0 2,812,968 - Psest_2632 0.23 -0.7 2,813,082 - Psest_2632 0.32 +0.5 2,813,110 + Psest_2632 0.34 +0.8 2,813,110 + Psest_2632 0.34 -1.9 2,813,110 + Psest_2632 0.34 -1.4 2,813,110 + Psest_2632 0.34 -0.5 2,813,110 + Psest_2632 0.34 -0.5 2,813,110 + Psest_2632 0.34 -0.9 2,813,111 - Psest_2632 0.34 +0.5 2,813,111 - Psest_2632 0.34 -1.1 2,813,111 - Psest_2632 0.34 -0.9 2,813,111 - Psest_2632 0.34 -0.2 2,813,267 + Psest_2632 0.46 -0.9 2,813,267 + Psest_2632 0.46 +0.5 2,813,268 - Psest_2632 0.46 +0.9 2,813,268 - Psest_2632 0.46 +1.5 2,813,268 - Psest_2632 0.46 +0.1 2,813,363 + Psest_2632 0.53 -0.1 2,813,364 - Psest_2632 0.53 +0.2 2,813,370 - Psest_2632 0.54 +1.5 2,813,606 + Psest_2632 0.71 -0.1 2,813,888 + +1.2 2,813,889 - -1.2 2,813,935 - -1.4 2,814,142 + -0.5 2,814,142 + +1.7 2,814,142 + -0.4 2,814,143 - +1.7 2,814,143 - +0.9 2,814,143 - +0.6 2,814,145 + -0.1 2,814,146 - +1.3 2,814,146 - +2.0 2,814,146 - -1.7 2,814,212 + -1.1 2,814,213 - +0.7 2,814,535 + Psest_2633 0.26 -0.9 2,814,535 + Psest_2633 0.26 -0.8 2,814,535 + Psest_2633 0.26 +1.1 2,814,535 + Psest_2633 0.26 -0.5 2,814,535 + Psest_2633 0.26 -0.0 2,814,535 + Psest_2633 0.26 +0.5 2,814,536 - Psest_2633 0.26 +0.9 2,814,536 - Psest_2633 0.26 -0.9 2,814,664 + Psest_2633 0.34 -1.5 2,814,664 + Psest_2633 0.34 -0.9 2,814,860 - Psest_2633 0.45 +0.5 2,814,868 + Psest_2633 0.46 +0.5 2,814,868 + Psest_2633 0.46 +2.5 2,814,869 - Psest_2633 0.46 +1.2 2,814,869 - Psest_2633 0.46 -3.4 2,814,869 - Psest_2633 0.46 -0.9 2,814,869 - Psest_2633 0.46 -0.1 2,814,869 - Psest_2633 0.46 -0.6 2,814,869 - Psest_2633 0.46 -0.5 2,814,869 - Psest_2633 0.46 -1.5 2,814,869 - Psest_2633 0.46 -0.9
Or see this region's nucleotide sequence