Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2514 and HP15_2515 are separated by 66 nucleotides HP15_2515 and HP15_2516 are separated by 27 nucleotides HP15_2516 and HP15_2517 are separated by 108 nucleotides
HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619
_2514
HP15_2515: HP15_2515 - hypothetical protein, at 2,654,686 to 2,654,814
_2515
HP15_2516: HP15_2516 - GTPase - translation elongation factor, at 2,654,842 to 2,656,647
_2516
HP15_2517: HP15_2517 - PAS sensor diguanylate cyclase/phosphodiesterase, at 2,656,756 to 2,658,840
_2517
Position (kb)
2654
2655
2656
2657 Strain fitness (log2 ratio)
-1
0
1
2 at 2654.050 kb on - strand, within HP15_2514 at 2654.085 kb on - strand, within HP15_2514 at 2654.349 kb on + strand, within HP15_2514 at 2654.565 kb on + strand at 2654.570 kb on + strand at 2654.702 kb on - strand, within HP15_2515 at 2654.809 kb on - strand at 2654.847 kb on + strand at 2654.869 kb on - strand at 2654.886 kb on - strand at 2654.934 kb on + strand at 2654.969 kb on - strand at 2654.983 kb on - strand at 2655.102 kb on - strand, within HP15_2516 at 2655.170 kb on + strand, within HP15_2516 at 2655.175 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.188 kb on + strand, within HP15_2516 at 2655.231 kb on + strand, within HP15_2516 at 2655.267 kb on - strand, within HP15_2516 at 2655.331 kb on + strand, within HP15_2516 at 2655.365 kb on + strand, within HP15_2516 at 2655.392 kb on - strand, within HP15_2516 at 2655.490 kb on - strand, within HP15_2516 at 2655.501 kb on + strand, within HP15_2516 at 2655.518 kb on + strand, within HP15_2516 at 2655.524 kb on - strand, within HP15_2516 at 2655.526 kb on - strand, within HP15_2516 at 2655.528 kb on + strand, within HP15_2516 at 2655.596 kb on + strand, within HP15_2516 at 2655.674 kb on + strand, within HP15_2516 at 2655.745 kb on + strand, within HP15_2516 at 2655.848 kb on + strand, within HP15_2516 at 2655.848 kb on + strand, within HP15_2516 at 2655.850 kb on + strand, within HP15_2516 at 2655.856 kb on - strand, within HP15_2516 at 2655.856 kb on - strand, within HP15_2516 at 2655.858 kb on - strand, within HP15_2516 at 2655.858 kb on - strand, within HP15_2516 at 2656.059 kb on + strand, within HP15_2516 at 2656.132 kb on - strand, within HP15_2516 at 2656.222 kb on + strand, within HP15_2516 at 2656.237 kb on - strand, within HP15_2516 at 2656.334 kb on + strand, within HP15_2516 at 2656.359 kb on + strand, within HP15_2516 at 2656.364 kb on + strand, within HP15_2516 at 2656.492 kb on + strand at 2656.524 kb on - strand at 2656.664 kb on + strand at 2656.664 kb on + strand at 2656.716 kb on + strand at 2656.968 kb on - strand, within HP15_2517 at 2657.038 kb on - strand, within HP15_2517 at 2657.052 kb on + strand, within HP15_2517 at 2657.104 kb on + strand, within HP15_2517 at 2657.166 kb on - strand, within HP15_2517 at 2657.243 kb on - strand, within HP15_2517 at 2657.261 kb on - strand, within HP15_2517 at 2657.571 kb on + strand, within HP15_2517
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,654,050 - HP15_2514 0.45 +1.6 2,654,085 - HP15_2514 0.49 -1.1 2,654,349 + HP15_2514 0.74 -1.4 2,654,565 + -1.1 2,654,570 + -0.0 2,654,702 - HP15_2515 0.12 +0.3 2,654,809 - -0.4 2,654,847 + +0.4 2,654,869 - -0.6 2,654,886 - +0.5 2,654,934 + +1.4 2,654,969 - +0.8 2,654,983 - -0.7 2,655,102 - HP15_2516 0.14 -0.1 2,655,170 + HP15_2516 0.18 +1.6 2,655,175 + HP15_2516 0.18 -0.7 2,655,188 + HP15_2516 0.19 -0.8 2,655,188 + HP15_2516 0.19 -0.2 2,655,188 + HP15_2516 0.19 +0.2 2,655,231 + HP15_2516 0.22 +0.2 2,655,267 - HP15_2516 0.24 +1.1 2,655,331 + HP15_2516 0.27 +0.0 2,655,365 + HP15_2516 0.29 -0.5 2,655,392 - HP15_2516 0.30 -1.2 2,655,490 - HP15_2516 0.36 +0.7 2,655,501 + HP15_2516 0.36 +0.1 2,655,518 + HP15_2516 0.37 -0.1 2,655,524 - HP15_2516 0.38 -0.4 2,655,526 - HP15_2516 0.38 +1.3 2,655,528 + HP15_2516 0.38 +0.4 2,655,596 + HP15_2516 0.42 +0.3 2,655,674 + HP15_2516 0.46 +0.2 2,655,745 + HP15_2516 0.50 +1.1 2,655,848 + HP15_2516 0.56 +0.1 2,655,848 + HP15_2516 0.56 -0.0 2,655,850 + HP15_2516 0.56 -0.8 2,655,856 - HP15_2516 0.56 +0.9 2,655,856 - HP15_2516 0.56 -0.3 2,655,858 - HP15_2516 0.56 +0.3 2,655,858 - HP15_2516 0.56 +0.2 2,656,059 + HP15_2516 0.67 -0.2 2,656,132 - HP15_2516 0.71 +0.9 2,656,222 + HP15_2516 0.76 -0.6 2,656,237 - HP15_2516 0.77 +0.1 2,656,334 + HP15_2516 0.83 +0.5 2,656,359 + HP15_2516 0.84 -0.1 2,656,364 + HP15_2516 0.84 -0.8 2,656,492 + +0.6 2,656,524 - +1.5 2,656,664 + +0.4 2,656,664 + +0.4 2,656,716 + +2.4 2,656,968 - HP15_2517 0.10 -1.1 2,657,038 - HP15_2517 0.14 -0.3 2,657,052 + HP15_2517 0.14 +0.1 2,657,104 + HP15_2517 0.17 +0.0 2,657,166 - HP15_2517 0.20 +0.6 2,657,243 - HP15_2517 0.23 -1.3 2,657,261 - HP15_2517 0.24 -0.5 2,657,571 + HP15_2517 0.39 -1.6
Or see this region's nucleotide sequence