Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2397

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2395 and Psest_2396 are separated by 2 nucleotidesPsest_2396 and Psest_2397 overlap by 4 nucleotidesPsest_2397 and Psest_2398 overlap by 4 nucleotidesPsest_2398 and Psest_2399 overlap by 4 nucleotides Psest_2395: Psest_2395 - Uncharacterized conserved protein, at 2,548,084 to 2,549,043 _2395 Psest_2396: Psest_2396 - Predicted transcriptional regulators, at 2,549,046 to 2,549,981 _2396 Psest_2397: Psest_2397 - Deoxyribodipyrimidine photolyase, at 2,549,978 to 2,551,408 _2397 Psest_2398: Psest_2398 - SnoaL-like polyketide cyclase., at 2,551,405 to 2,551,833 _2398 Psest_2399: Psest_2399 - Short-chain dehydrogenases of various substrate specificities, at 2,551,830 to 2,552,597 _2399 Position (kb) 2549 2550 2551 2552Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.996 kb on + strandat 2548.997 kb on - strandat 2548.997 kb on - strandat 2549.206 kb on - strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.760 kb on + strand, within Psest_2396at 2549.761 kb on - strand, within Psest_2396at 2549.861 kb on + strand, within Psest_2396at 2549.861 kb on + strand, within Psest_2396at 2550.071 kb on + strandat 2550.071 kb on + strandat 2550.071 kb on + strandat 2550.272 kb on + strand, within Psest_2397at 2550.272 kb on + strand, within Psest_2397at 2550.272 kb on + strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.423 kb on + strand, within Psest_2397at 2550.650 kb on + strand, within Psest_2397at 2550.650 kb on + strand, within Psest_2397at 2550.651 kb on - strand, within Psest_2397at 2550.651 kb on - strand, within Psest_2397at 2550.704 kb on + strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.833 kb on + strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.924 kb on - strand, within Psest_2397at 2551.483 kb on + strand, within Psest_2398at 2551.484 kb on - strand, within Psest_2398at 2551.549 kb on + strand, within Psest_2398at 2551.550 kb on - strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.630 kb on + strand, within Psest_2398at 2551.630 kb on + strand, within Psest_2398at 2551.750 kb on + strand, within Psest_2398at 2551.751 kb on - strand, within Psest_2398at 2551.774 kb on + strand, within Psest_2398at 2551.775 kb on - strand, within Psest_2398at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.101 kb on - strand, within Psest_2399at 2552.144 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.233 kb on + strand, within Psest_2399at 2552.234 kb on - strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.278 kb on - strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,548,978 + -0.5
2,548,978 + +1.7
2,548,978 + +2.1
2,548,978 + +0.6
2,548,978 + -0.5
2,548,996 + -0.1
2,548,997 - -2.8
2,548,997 - -1.2
2,549,206 - Psest_2396 0.17 -0.6
2,549,562 + Psest_2396 0.55 -1.8
2,549,562 + Psest_2396 0.55 -0.8
2,549,562 + Psest_2396 0.55 -2.0
2,549,562 + Psest_2396 0.55 +0.6
2,549,562 + Psest_2396 0.55 -1.0
2,549,562 + Psest_2396 0.55 -0.6
2,549,563 - Psest_2396 0.55 -0.4
2,549,563 - Psest_2396 0.55 +0.8
2,549,563 - Psest_2396 0.55 -2.0
2,549,760 + Psest_2396 0.76 +1.1
2,549,761 - Psest_2396 0.76 -0.3
2,549,861 + Psest_2396 0.87 +0.1
2,549,861 + Psest_2396 0.87 +1.1
2,550,071 + -1.4
2,550,071 + -2.8
2,550,071 + -0.8
2,550,272 + Psest_2397 0.21 -0.9
2,550,272 + Psest_2397 0.21 -1.4
2,550,272 + Psest_2397 0.21 -0.8
2,550,273 - Psest_2397 0.21 -2.0
2,550,273 - Psest_2397 0.21 -1.2
2,550,273 - Psest_2397 0.21 -0.9
2,550,273 - Psest_2397 0.21 +0.2
2,550,423 + Psest_2397 0.31 -2.0
2,550,650 + Psest_2397 0.47 -0.4
2,550,650 + Psest_2397 0.47 -2.1
2,550,651 - Psest_2397 0.47 -1.6
2,550,651 - Psest_2397 0.47 -3.0
2,550,704 + Psest_2397 0.51 -0.8
2,550,800 - Psest_2397 0.57 -3.3
2,550,800 - Psest_2397 0.57 -2.5
2,550,800 - Psest_2397 0.57 -1.7
2,550,833 + Psest_2397 0.60 -1.3
2,550,834 - Psest_2397 0.60 +0.9
2,550,834 - Psest_2397 0.60 -0.2
2,550,834 - Psest_2397 0.60 +1.6
2,550,834 - Psest_2397 0.60 +0.8
2,550,924 - Psest_2397 0.66 -1.8
2,551,483 + Psest_2398 0.18 +3.1
2,551,484 - Psest_2398 0.18 -1.0
2,551,549 + Psest_2398 0.34 -2.9
2,551,550 - Psest_2398 0.34 +0.0
2,551,564 + Psest_2398 0.37 -1.2
2,551,564 + Psest_2398 0.37 -0.4
2,551,564 + Psest_2398 0.37 -1.4
2,551,630 + Psest_2398 0.52 -2.6
2,551,630 + Psest_2398 0.52 -1.4
2,551,750 + Psest_2398 0.80 -1.8
2,551,751 - Psest_2398 0.81 -3.0
2,551,774 + Psest_2398 0.86 -0.8
2,551,775 - Psest_2398 0.86 -2.6
2,552,100 + Psest_2399 0.35 +0.7
2,552,100 + Psest_2399 0.35 -1.6
2,552,100 + Psest_2399 0.35 +1.1
2,552,100 + Psest_2399 0.35 +1.1
2,552,100 + Psest_2399 0.35 +0.9
2,552,100 + Psest_2399 0.35 +0.3
2,552,101 - Psest_2399 0.35 +0.3
2,552,144 + Psest_2399 0.41 -2.1
2,552,212 + Psest_2399 0.50 -0.7
2,552,212 + Psest_2399 0.50 -1.9
2,552,213 - Psest_2399 0.50 -0.9
2,552,213 - Psest_2399 0.50 -1.9
2,552,233 + Psest_2399 0.52 -0.6
2,552,234 - Psest_2399 0.53 -0.9
2,552,277 + Psest_2399 0.58 -1.4
2,552,277 + Psest_2399 0.58 +0.2
2,552,278 - Psest_2399 0.58 -1.2
2,552,353 + Psest_2399 0.68 -0.4
2,552,353 + Psest_2399 0.68 +1.1
2,552,353 + Psest_2399 0.68 +1.1
2,552,354 - Psest_2399 0.68 -2.0
2,552,354 - Psest_2399 0.68 +1.0
2,552,354 - Psest_2399 0.68 -3.3
2,552,354 - Psest_2399 0.68 -1.6

Or see this region's nucleotide sequence