Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0234

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0233 and Psest_0234 are separated by 67 nucleotidesPsest_0234 and Psest_0235 are separated by 500 nucleotides Psest_0233: Psest_0233 - hypothetical protein, at 241,746 to 243,479 _0233 Psest_0234: Psest_0234 - dihydroxy-acid dehydratase, at 243,547 to 245,385 _0234 Psest_0235: Psest_0235 - isoform II., at 245,886 to 246,734 _0235 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 242.653 kb on - strand, within Psest_0233at 242.951 kb on - strand, within Psest_0233at 243.084 kb on + strand, within Psest_0233at 243.084 kb on + strand, within Psest_0233at 243.119 kb on + strand, within Psest_0233at 243.119 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.232 kb on + strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.233 kb on - strand, within Psest_0233at 243.406 kb on + strandat 243.407 kb on - strandat 243.526 kb on + strandat 243.526 kb on + strandat 243.527 kb on - strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.425 kb on + strandat 245.425 kb on + strandat 245.426 kb on - strandat 245.550 kb on + strandat 245.551 kb on - strandat 245.562 kb on + strandat 245.562 kb on + strandat 245.563 kb on - strandat 245.563 kb on - strandat 245.654 kb on - strandat 245.747 kb on + strandat 245.747 kb on + strandat 245.747 kb on + strandat 245.748 kb on - strandat 245.826 kb on + strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.857 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.907 kb on + strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.911 kb on + strandat 245.911 kb on + strandat 245.912 kb on - strandat 246.022 kb on - strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.250 kb on - strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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242,653 - Psest_0233 0.52 +0.3
242,951 - Psest_0233 0.69 +1.0
243,084 + Psest_0233 0.77 -0.0
243,084 + Psest_0233 0.77 -1.3
243,119 + Psest_0233 0.79 +1.6
243,119 + Psest_0233 0.79 +0.3
243,232 + Psest_0233 0.86 +1.1
243,232 + Psest_0233 0.86 -1.8
243,232 + Psest_0233 0.86 +0.4
243,232 + Psest_0233 0.86 -1.7
243,232 + Psest_0233 0.86 -1.5
243,233 - Psest_0233 0.86 -0.1
243,233 - Psest_0233 0.86 +0.1
243,233 - Psest_0233 0.86 +1.1
243,233 - Psest_0233 0.86 +0.5
243,233 - Psest_0233 0.86 +1.1
243,233 - Psest_0233 0.86 +0.4
243,406 + +1.9
243,407 - +0.7
243,526 + +1.0
243,526 + -2.2
243,527 - +0.9
245,419 + -2.7
245,419 + -0.3
245,419 + +0.7
245,419 + -1.2
245,420 - -1.0
245,420 - -2.5
245,420 - -1.8
245,420 - -0.1
245,425 + -0.3
245,425 + +1.4
245,426 - +0.6
245,550 + +0.2
245,551 - +0.1
245,562 + -1.8
245,562 + +0.5
245,563 - -1.3
245,563 - -0.3
245,654 - +0.3
245,747 + +1.6
245,747 + +0.5
245,747 + +0.5
245,748 - -1.0
245,826 + +0.9
245,851 - +0.9
245,851 - +1.9
245,851 - +1.4
245,857 + -0.1
245,859 + +1.2
245,859 + +0.7
245,859 + +1.9
245,859 + -1.6
245,859 + +0.3
245,907 + +0.3
245,908 - +0.6
245,908 - -2.0
245,908 - -0.4
245,908 - -0.9
245,908 - +2.6
245,911 + -0.1
245,911 + +0.2
245,912 - -0.9
246,022 - Psest_0235 0.16 -0.5
246,147 + Psest_0235 0.31 +0.1
246,147 + Psest_0235 0.31 -0.2
246,148 - Psest_0235 0.31 +1.1
246,148 - Psest_0235 0.31 +0.3
246,148 - Psest_0235 0.31 +0.6
246,249 + Psest_0235 0.43 -0.9
246,249 + Psest_0235 0.43 +0.8
246,250 - Psest_0235 0.43 -1.2
246,276 + Psest_0235 0.46 -1.9
246,276 + Psest_0235 0.46 -0.9
246,285 + Psest_0235 0.47 -0.3
246,285 + Psest_0235 0.47 +0.6
246,285 + Psest_0235 0.47 +0.1
246,285 + Psest_0235 0.47 +0.3
246,285 + Psest_0235 0.47 -2.0
246,285 + Psest_0235 0.47 -0.6
246,285 + Psest_0235 0.47 +0.4
246,285 + Psest_0235 0.47 -0.0
246,285 + Psest_0235 0.47 +0.0
246,286 - Psest_0235 0.47 -1.1
246,286 - Psest_0235 0.47 +1.8
246,286 - Psest_0235 0.47 -2.1
246,286 - Psest_0235 0.47 +1.6
246,286 - Psest_0235 0.47 +0.3
246,286 - Psest_0235 0.47 +1.0
246,286 - Psest_0235 0.47 -0.7
246,286 - Psest_0235 0.47 -1.2
246,318 - Psest_0235 0.51 +0.6
246,318 - Psest_0235 0.51 -0.3

Or see this region's nucleotide sequence