Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2166 and HP15_2167 are separated by 204 nucleotides HP15_2167 and HP15_2168 are separated by 185 nucleotides
HP15_2166: HP15_2166 - glycerol kinase, at 2,273,876 to 2,275,348
_2166
HP15_2167: HP15_2167 - transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate, DeoR family protein, at 2,275,553 to 2,276,309
_2167
HP15_2168: HP15_2168 - FAD dependent oxidoreductase, at 2,276,495 to 2,278,018
_2168
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-1
0
1
2 at 2274.583 kb on + strand, within HP15_2166 at 2274.632 kb on + strand, within HP15_2166 at 2274.728 kb on + strand, within HP15_2166 at 2274.784 kb on + strand, within HP15_2166 at 2274.810 kb on + strand, within HP15_2166 at 2274.851 kb on + strand, within HP15_2166 at 2274.990 kb on - strand, within HP15_2166 at 2274.996 kb on - strand, within HP15_2166 at 2274.996 kb on - strand, within HP15_2166 at 2275.027 kb on - strand, within HP15_2166 at 2275.116 kb on - strand, within HP15_2166 at 2275.127 kb on + strand, within HP15_2166 at 2275.300 kb on - strand at 2275.300 kb on - strand at 2275.324 kb on - strand at 2275.614 kb on + strand at 2275.643 kb on - strand, within HP15_2167 at 2275.649 kb on + strand, within HP15_2167 at 2275.649 kb on + strand, within HP15_2167 at 2275.708 kb on + strand, within HP15_2167 at 2275.828 kb on - strand, within HP15_2167 at 2276.029 kb on - strand, within HP15_2167 at 2276.188 kb on - strand, within HP15_2167 at 2276.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,274,583 + HP15_2166 0.48 +0.2 2,274,632 + HP15_2166 0.51 -0.4 2,274,728 + HP15_2166 0.58 -1.2 2,274,784 + HP15_2166 0.62 +0.1 2,274,810 + HP15_2166 0.63 +0.2 2,274,851 + HP15_2166 0.66 -1.0 2,274,990 - HP15_2166 0.76 +0.1 2,274,996 - HP15_2166 0.76 -0.5 2,274,996 - HP15_2166 0.76 +0.4 2,275,027 - HP15_2166 0.78 -0.8 2,275,116 - HP15_2166 0.84 +0.0 2,275,127 + HP15_2166 0.85 -0.2 2,275,300 - +0.3 2,275,300 - -0.1 2,275,324 - -0.8 2,275,614 + +1.1 2,275,643 - HP15_2167 0.12 +1.2 2,275,649 + HP15_2167 0.13 +0.9 2,275,649 + HP15_2167 0.13 +1.2 2,275,708 + HP15_2167 0.20 +1.0 2,275,828 - HP15_2167 0.36 +1.7 2,276,029 - HP15_2167 0.63 +0.8 2,276,188 - HP15_2167 0.84 +1.3 2,276,295 - +2.1
Or see this region's nucleotide sequence