Strain Fitness in Marinobacter adhaerens HP15 around HP15_2048

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2047 and HP15_2048 overlap by 4 nucleotidesHP15_2048 and HP15_2049 are separated by 9 nucleotidesHP15_2049 and HP15_2050 are separated by 20 nucleotides HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797 _2047 HP15_2048: HP15_2048 - UDP-glucose 4-epimerase, at 2,146,794 to 2,147,822 _2048 HP15_2049: HP15_2049 - cytidine/deoxycytidylate deaminase family protein, at 2,147,832 to 2,148,335 _2049 HP15_2050: HP15_2050 - bifunctional GMP synthase/glutamine amidotransferase protein, at 2,148,356 to 2,149,933 _2050 Position (kb) 2146 2147 2148Strain fitness (log2 ratio) -1 0 1 2at 2145.875 kb on + strand, within HP15_2047at 2146.025 kb on + strand, within HP15_2047at 2146.186 kb on + strand, within HP15_2047at 2146.259 kb on - strand, within HP15_2047at 2146.411 kb on - strand, within HP15_2047at 2146.441 kb on - strand, within HP15_2047at 2146.617 kb on + strand, within HP15_2047at 2146.625 kb on - strand, within HP15_2047at 2146.676 kb on + strandat 2146.875 kb on - strandat 2146.922 kb on + strand, within HP15_2048at 2147.059 kb on - strand, within HP15_2048at 2147.107 kb on + strand, within HP15_2048at 2147.137 kb on + strand, within HP15_2048at 2147.197 kb on + strand, within HP15_2048at 2147.376 kb on - strand, within HP15_2048at 2147.537 kb on - strand, within HP15_2048at 2147.537 kb on - strand, within HP15_2048at 2147.719 kb on + strand, within HP15_2048

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,145,875 + HP15_2047 0.31 -0.4
2,146,025 + HP15_2047 0.42 -0.1
2,146,186 + HP15_2047 0.54 -0.4
2,146,259 - HP15_2047 0.60 +0.3
2,146,411 - HP15_2047 0.71 -0.5
2,146,441 - HP15_2047 0.73 -0.8
2,146,617 + HP15_2047 0.87 +0.6
2,146,625 - HP15_2047 0.87 -0.1
2,146,676 + +2.5
2,146,875 - +2.3
2,146,922 + HP15_2048 0.12 +0.6
2,147,059 - HP15_2048 0.26 +0.4
2,147,107 + HP15_2048 0.30 +0.8
2,147,137 + HP15_2048 0.33 -0.1
2,147,197 + HP15_2048 0.39 -0.1
2,147,376 - HP15_2048 0.57 -0.5
2,147,537 - HP15_2048 0.72 +0.6
2,147,537 - HP15_2048 0.72 +1.0
2,147,719 + HP15_2048 0.90 +0.2

Or see this region's nucleotide sequence