Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1980 and HP15_1981 are separated by 66 nucleotides HP15_1981 and HP15_1982 are separated by 87 nucleotides HP15_1982 and HP15_1983 are separated by 189 nucleotides HP15_1983 and HP15_1984 are separated by 92 nucleotides HP15_1984 and HP15_1985 overlap by 4 nucleotides HP15_1985 and HP15_1986 overlap by 1 nucleotides
HP15_1980: HP15_1980 - virulence-associated E family protein, at 2,095,014 to 2,095,910
_1980
HP15_1981: HP15_1981 - conserved hypothetical protein, at 2,095,977 to 2,096,213
_1981
HP15_1982: HP15_1982 - hypothetical protein, at 2,096,301 to 2,096,717
_1982
HP15_1983: HP15_1983 - hypothetical protein, at 2,096,907 to 2,097,542
_1983
HP15_1984: HP15_1984 - hypothetical protein, at 2,097,635 to 2,098,078
_1984
HP15_1985: HP15_1985 - protein containing phage antirepressor protein domain, at 2,098,075 to 2,098,377
_1985
HP15_1986: HP15_1986 - hypothetical protein, at 2,098,377 to 2,098,625
_1986
Position (kb)
2096
2097
2098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2096.024 kb on + strand, within HP15_1981 at 2096.024 kb on + strand, within HP15_1981 at 2096.092 kb on + strand, within HP15_1981 at 2096.169 kb on + strand, within HP15_1981 at 2096.172 kb on + strand, within HP15_1981 at 2096.771 kb on + strand at 2096.799 kb on - strand at 2096.987 kb on - strand, within HP15_1983 at 2097.050 kb on + strand, within HP15_1983 at 2097.080 kb on + strand, within HP15_1983 at 2097.148 kb on + strand, within HP15_1983 at 2097.174 kb on + strand, within HP15_1983 at 2097.315 kb on - strand, within HP15_1983 at 2097.396 kb on + strand, within HP15_1983 at 2097.422 kb on + strand, within HP15_1983 at 2097.463 kb on + strand, within HP15_1983 at 2097.493 kb on + strand at 2097.867 kb on - strand, within HP15_1984 at 2098.066 kb on - strand at 2098.076 kb on - strand at 2098.236 kb on - strand, within HP15_1985 at 2098.271 kb on - strand, within HP15_1985 at 2098.302 kb on - strand, within HP15_1985 at 2098.317 kb on - strand, within HP15_1985 at 2098.317 kb on - strand, within HP15_1985 at 2098.418 kb on - strand, within HP15_1986
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,096,024 + HP15_1981 0.20 -1.0 2,096,024 + HP15_1981 0.20 +1.3 2,096,092 + HP15_1981 0.49 -0.4 2,096,169 + HP15_1981 0.81 -0.0 2,096,172 + HP15_1981 0.82 -0.7 2,096,771 + +0.5 2,096,799 - +0.4 2,096,987 - HP15_1983 0.13 +0.0 2,097,050 + HP15_1983 0.22 +0.3 2,097,080 + HP15_1983 0.27 +0.5 2,097,148 + HP15_1983 0.38 +1.8 2,097,174 + HP15_1983 0.42 +0.4 2,097,315 - HP15_1983 0.64 +0.0 2,097,396 + HP15_1983 0.77 +1.2 2,097,422 + HP15_1983 0.81 -0.4 2,097,463 + HP15_1983 0.87 +0.6 2,097,493 + +1.2 2,097,867 - HP15_1984 0.52 -2.8 2,098,066 - +0.5 2,098,076 - +0.5 2,098,236 - HP15_1985 0.53 -0.3 2,098,271 - HP15_1985 0.65 +0.6 2,098,302 - HP15_1985 0.75 -0.1 2,098,317 - HP15_1985 0.80 +0.4 2,098,317 - HP15_1985 0.80 +0.7 2,098,418 - HP15_1986 0.16 +2.1
Or see this region's nucleotide sequence