Strain Fitness in Marinobacter adhaerens HP15 around HP15_201

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_200 and HP15_201 are separated by 89 nucleotidesHP15_201 and HP15_202 overlap by 4 nucleotidesHP15_202 and HP15_203 are separated by 4 nucleotides HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472 _200 HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599 _201 HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528 _202 HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531 _203 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1at 187.756 kb on - strand, within HP15_200at 187.895 kb on + strand, within HP15_200at 187.902 kb on - strand, within HP15_200at 187.929 kb on + strand, within HP15_200at 187.937 kb on - strand, within HP15_200at 187.947 kb on + strand, within HP15_200at 188.072 kb on - strand, within HP15_200at 188.096 kb on - strand, within HP15_200at 188.100 kb on + strand, within HP15_200at 188.100 kb on + strand, within HP15_200at 188.103 kb on - strand, within HP15_200at 188.161 kb on + strand, within HP15_200at 188.219 kb on + strand, within HP15_200at 188.224 kb on + strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.309 kb on - strand, within HP15_200at 188.309 kb on - strand, within HP15_200at 188.375 kb on + strandat 188.383 kb on - strandat 188.441 kb on + strandat 188.449 kb on - strandat 188.501 kb on - strandat 188.538 kb on - strandat 188.552 kb on - strandat 188.634 kb on + strandat 188.658 kb on + strandat 188.684 kb on + strand, within HP15_201at 188.956 kb on - strand, within HP15_201at 189.013 kb on + strand, within HP15_201at 189.013 kb on - strand, within HP15_201at 189.021 kb on - strand, within HP15_201at 189.166 kb on + strand, within HP15_201at 189.166 kb on + strand, within HP15_201at 189.174 kb on - strand, within HP15_201at 189.174 kb on - strand, within HP15_201at 189.221 kb on + strand, within HP15_201at 189.239 kb on + strand, within HP15_201at 189.293 kb on + strand, within HP15_201at 189.325 kb on - strand, within HP15_201at 189.338 kb on + strand, within HP15_201at 189.344 kb on - strand, within HP15_201at 189.393 kb on - strand, within HP15_201at 189.441 kb on + strand, within HP15_201at 189.504 kb on - strandat 189.556 kb on + strandat 189.568 kb on - strandat 189.571 kb on - strandat 189.766 kb on + strand, within HP15_202at 189.774 kb on - strand, within HP15_202at 189.774 kb on - strand, within HP15_202at 189.859 kb on + strand, within HP15_202at 189.984 kb on - strand, within HP15_202at 190.057 kb on + strand, within HP15_202at 190.057 kb on + strand, within HP15_202at 190.065 kb on - strand, within HP15_202at 190.065 kb on - strand, within HP15_202at 190.138 kb on + strand, within HP15_202at 190.157 kb on + strand, within HP15_202at 190.300 kb on - strand, within HP15_202at 190.375 kb on - strand, within HP15_202at 190.421 kb on - strand, within HP15_202at 190.506 kb on + strandat 190.506 kb on + strandat 190.523 kb on + strandat 190.524 kb on - strandat 190.531 kb on + strandat 190.531 kb on - strandat 190.539 kb on - strandat 190.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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187,756 - HP15_200 0.55 -0.1
187,895 + HP15_200 0.64 -0.1
187,902 - HP15_200 0.64 -0.6
187,929 + HP15_200 0.66 +0.1
187,937 - HP15_200 0.66 -0.6
187,947 + HP15_200 0.67 +0.8
188,072 - HP15_200 0.75 -0.3
188,096 - HP15_200 0.76 -0.7
188,100 + HP15_200 0.77 +0.2
188,100 + HP15_200 0.77 -0.4
188,103 - HP15_200 0.77 +0.0
188,161 + HP15_200 0.80 +1.2
188,219 + HP15_200 0.84 -0.1
188,224 + HP15_200 0.84 -0.4
188,232 - HP15_200 0.85 -0.7
188,232 - HP15_200 0.85 +0.2
188,232 - HP15_200 0.85 -0.5
188,309 - HP15_200 0.90 -0.1
188,309 - HP15_200 0.90 -0.1
188,375 + -2.0
188,383 - -0.6
188,441 + -1.2
188,449 - -0.2
188,501 - +0.2
188,538 - -0.1
188,552 - -0.2
188,634 + -0.6
188,658 + +0.7
188,684 + HP15_201 0.12 -1.1
188,956 - HP15_201 0.38 -0.6
189,013 + HP15_201 0.43 -0.1
189,013 - HP15_201 0.43 -0.2
189,021 - HP15_201 0.44 -0.1
189,166 + HP15_201 0.58 +1.6
189,166 + HP15_201 0.58 -0.5
189,174 - HP15_201 0.59 +0.3
189,174 - HP15_201 0.59 -0.9
189,221 + HP15_201 0.63 +1.1
189,239 + HP15_201 0.65 -0.0
189,293 + HP15_201 0.70 +0.1
189,325 - HP15_201 0.74 -0.8
189,338 + HP15_201 0.75 -0.0
189,344 - HP15_201 0.75 -0.4
189,393 - HP15_201 0.80 -1.6
189,441 + HP15_201 0.85 -1.4
189,504 - +0.0
189,556 + -0.6
189,568 - -0.8
189,571 - -0.1
189,766 + HP15_202 0.18 +0.2
189,774 - HP15_202 0.19 -1.1
189,774 - HP15_202 0.19 -0.1
189,859 + HP15_202 0.28 +0.2
189,984 - HP15_202 0.42 +0.1
190,057 + HP15_202 0.49 -1.2
190,057 + HP15_202 0.49 -0.8
190,065 - HP15_202 0.50 -1.3
190,065 - HP15_202 0.50 -0.2
190,138 + HP15_202 0.58 -0.2
190,157 + HP15_202 0.60 +0.2
190,300 - HP15_202 0.75 -0.3
190,375 - HP15_202 0.83 -0.3
190,421 - HP15_202 0.88 -0.3
190,506 + -0.3
190,506 + -0.0
190,523 + -1.1
190,524 - -1.4
190,531 + +0.1
190,531 - +0.0
190,539 - -0.2
190,582 + -1.3

Or see this region's nucleotide sequence