Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1903

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1902 and Psest_1903 are separated by 145 nucleotidesPsest_1903 and Psest_1904 are separated by 74 nucleotides Psest_1902: Psest_1902 - hypothetical protein, at 2,012,429 to 2,013,388 _1902 Psest_1903: Psest_1903 - chorismate synthase, at 2,013,534 to 2,014,625 _1903 Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851 _1904 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -2 -1 0 1 2at 2012.733 kb on + strand, within Psest_1902at 2012.734 kb on - strand, within Psest_1902at 2012.876 kb on + strand, within Psest_1902at 2012.877 kb on - strand, within Psest_1902at 2012.877 kb on - strand, within Psest_1902at 2013.049 kb on - strand, within Psest_1902at 2013.203 kb on - strand, within Psest_1902at 2013.288 kb on - strand, within Psest_1902at 2013.490 kb on - strandat 2013.490 kb on - strandat 2013.491 kb on + strandat 2013.491 kb on + strandat 2014.613 kb on - strandat 2014.613 kb on - strandat 2014.666 kb on + strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.700 kb on - strandat 2014.740 kb on - strandat 2014.790 kb on + strandat 2014.791 kb on - strandat 2015.322 kb on - strand, within Psest_1904at 2015.360 kb on + strand, within Psest_1904at 2015.363 kb on + strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.548 kb on - strand, within Psest_1904at 2015.608 kb on + strand, within Psest_1904at 2015.609 kb on - strand, within Psest_1904

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,012,733 + Psest_1902 0.32 -0.3
2,012,734 - Psest_1902 0.32 -0.3
2,012,876 + Psest_1902 0.47 -1.7
2,012,877 - Psest_1902 0.47 -0.1
2,012,877 - Psest_1902 0.47 +0.7
2,013,049 - Psest_1902 0.65 -1.4
2,013,203 - Psest_1902 0.81 +0.2
2,013,288 - Psest_1902 0.89 -0.8
2,013,490 - -0.6
2,013,490 - -1.7
2,013,491 + -1.9
2,013,491 + -1.4
2,014,613 - -0.6
2,014,613 - -0.6
2,014,666 + -2.1
2,014,667 - -0.9
2,014,667 - -1.1
2,014,667 - -1.6
2,014,667 - -0.3
2,014,667 - +1.4
2,014,700 - +0.9
2,014,740 - +1.9
2,014,790 + -1.1
2,014,791 - -1.5
2,015,322 - Psest_1904 0.54 -0.9
2,015,360 + Psest_1904 0.57 -0.9
2,015,363 + Psest_1904 0.58 -0.7
2,015,364 - Psest_1904 0.58 -2.3
2,015,364 - Psest_1904 0.58 -0.4
2,015,364 - Psest_1904 0.58 -0.9
2,015,548 - Psest_1904 0.74 -0.8
2,015,608 + Psest_1904 0.79 +0.0
2,015,609 - Psest_1904 0.79 +0.4

Or see this region's nucleotide sequence