Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1774 and HP15_1775 are separated by 23 nucleotides HP15_1775 and HP15_1776 are separated by 81 nucleotides HP15_1776 and HP15_1777 are separated by 18 nucleotides HP15_1777 and HP15_1778 are separated by 9 nucleotides
HP15_1774: HP15_1774 - conserved hypothetical protein, membrane, at 1,871,550 to 1,872,071
_1774
HP15_1775: HP15_1775 - conserved hypothetical protein, at 1,872,095 to 1,872,808
_1775
HP15_1776: HP15_1776 - exonuclease III, at 1,872,890 to 1,873,702
_1776
HP15_1777: HP15_1777 - transcriptional regulator, TetR family, at 1,873,721 to 1,874,350
_1777
HP15_1778: HP15_1778 - poly(hydroxyalkanoate) granule-associated protein, at 1,874,360 to 1,874,773
_1778
Position (kb) 1872
1873
1874 Strain fitness (log2 ratio) -1
0
1
2
3 at 1872.006 kb on - strand, within HP15_1774 at 1872.221 kb on + strand, within HP15_1775 at 1872.378 kb on - strand, within HP15_1775 at 1872.620 kb on + strand, within HP15_1775 at 1872.698 kb on - strand, within HP15_1775 at 1873.080 kb on + strand, within HP15_1776 at 1873.139 kb on + strand, within HP15_1776 at 1873.172 kb on + strand, within HP15_1776 at 1873.280 kb on + strand, within HP15_1776 at 1873.336 kb on - strand, within HP15_1776 at 1873.532 kb on - strand, within HP15_1776 at 1873.558 kb on + strand, within HP15_1776 at 1873.580 kb on + strand, within HP15_1776 at 1873.600 kb on - strand, within HP15_1776 at 1873.631 kb on - strand at 1873.771 kb on + strand at 1873.779 kb on - strand at 1873.886 kb on + strand, within HP15_1777 at 1874.262 kb on + strand, within HP15_1777 at 1874.290 kb on + strand at 1874.295 kb on + strand at 1874.622 kb on - strand, within HP15_1778 at 1874.699 kb on - strand, within HP15_1778
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 1,872,006 - HP15_1774 0.87 +1.6 1,872,221 + HP15_1775 0.18 -1.0 1,872,378 - HP15_1775 0.40 -1.2 1,872,620 + HP15_1775 0.74 +0.9 1,872,698 - HP15_1775 0.84 +0.5 1,873,080 + HP15_1776 0.23 +0.0 1,873,139 + HP15_1776 0.31 -0.4 1,873,172 + HP15_1776 0.35 -0.5 1,873,280 + HP15_1776 0.48 -0.0 1,873,336 - HP15_1776 0.55 +0.3 1,873,532 - HP15_1776 0.79 -1.3 1,873,558 + HP15_1776 0.82 +2.8 1,873,580 + HP15_1776 0.85 -1.1 1,873,600 - HP15_1776 0.87 -1.4 1,873,631 - +0.5 1,873,771 + -0.7 1,873,779 - +0.1 1,873,886 + HP15_1777 0.26 +0.1 1,874,262 + HP15_1777 0.86 -0.5 1,874,290 + +0.7 1,874,295 + +0.3 1,874,622 - HP15_1778 0.63 +0.5 1,874,699 - HP15_1778 0.82 -0.8
Or see this region's nucleotide sequence