Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1841

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1840 and Psest_1841 are separated by 375 nucleotidesPsest_1841 and Psest_1842 are separated by 110 nucleotides Psest_1840: Psest_1840 - Undecaprenyl-phosphate glucose phosphotransferase, at 1,943,355 to 1,944,782 _1840 Psest_1841: Psest_1841 - lipid kinase YegS, at 1,945,158 to 1,946,069 _1841 Psest_1842: Psest_1842 - Chemotaxis signal transduction protein, at 1,946,180 to 1,947,112 _1842 Position (kb) 1945 1946 1947Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1944.289 kb on + strand, within Psest_1840at 1944.289 kb on + strand, within Psest_1840at 1944.289 kb on + strand, within Psest_1840at 1944.289 kb on + strand, within Psest_1840at 1944.303 kb on + strand, within Psest_1840at 1944.303 kb on + strand, within Psest_1840at 1944.303 kb on + strand, within Psest_1840at 1944.304 kb on - strand, within Psest_1840at 1944.306 kb on - strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.568 kb on + strand, within Psest_1840at 1944.569 kb on - strand, within Psest_1840at 1944.569 kb on - strand, within Psest_1840at 1944.569 kb on - strand, within Psest_1840at 1944.569 kb on - strand, within Psest_1840at 1944.569 kb on - strand, within Psest_1840at 1944.619 kb on - strand, within Psest_1840at 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.727 kb on + strandat 1944.727 kb on + strandat 1944.728 kb on - strandat 1944.728 kb on - strandat 1944.751 kb on + strandat 1944.751 kb on + strandat 1944.751 kb on + strandat 1944.751 kb on + strandat 1944.751 kb on + strandat 1944.752 kb on - strandat 1944.752 kb on - strandat 1944.752 kb on - strandat 1944.752 kb on - strandat 1944.752 kb on - strandat 1944.774 kb on + strandat 1944.775 kb on - strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.782 kb on + strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.783 kb on - strandat 1944.826 kb on + strandat 1944.826 kb on + strandat 1944.826 kb on + strandat 1944.827 kb on - strandat 1944.923 kb on + strandat 1944.973 kb on + strandat 1945.123 kb on + strandat 1945.124 kb on - strandat 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.495 kb on + strand, within Psest_1841at 1945.496 kb on - strand, within Psest_1841at 1945.496 kb on - strand, within Psest_1841at 1945.553 kb on + strand, within Psest_1841at 1945.632 kb on + strand, within Psest_1841at 1945.633 kb on - strand, within Psest_1841at 1945.633 kb on - strand, within Psest_1841at 1945.746 kb on - strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.810 kb on + strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.811 kb on - strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.814 kb on + strand, within Psest_1841at 1945.815 kb on - strand, within Psest_1841at 1945.815 kb on - strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.861 kb on + strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1945.862 kb on - strand, within Psest_1841at 1946.120 kb on + strandat 1946.120 kb on + strandat 1946.150 kb on + strandat 1946.150 kb on + strandat 1946.151 kb on - strandat 1946.347 kb on + strand, within Psest_1842at 1946.347 kb on + strand, within Psest_1842at 1946.348 kb on - strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.468 kb on + strand, within Psest_1842at 1946.469 kb on - strand, within Psest_1842at 1946.574 kb on - strand, within Psest_1842at 1946.655 kb on - strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.966 kb on + strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.967 kb on - strand, within Psest_1842at 1946.974 kb on - strand, within Psest_1842

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,944,289 + Psest_1840 0.65 +4.6
1,944,289 + Psest_1840 0.65 +4.3
1,944,289 + Psest_1840 0.65 +4.1
1,944,289 + Psest_1840 0.65 +4.5
1,944,303 + Psest_1840 0.66 +4.5
1,944,303 + Psest_1840 0.66 +4.4
1,944,303 + Psest_1840 0.66 +4.4
1,944,304 - Psest_1840 0.66 +4.6
1,944,306 - Psest_1840 0.67 +4.6
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.3
1,944,568 + Psest_1840 0.85 +4.5
1,944,568 + Psest_1840 0.85 +4.2
1,944,568 + Psest_1840 0.85 +4.3
1,944,569 - Psest_1840 0.85 +4.3
1,944,569 - Psest_1840 0.85 +4.3
1,944,569 - Psest_1840 0.85 +4.3
1,944,569 - Psest_1840 0.85 +4.1
1,944,569 - Psest_1840 0.85 +4.5
1,944,619 - Psest_1840 0.89 +4.4
1,944,702 + +4.2
1,944,702 + +4.9
1,944,702 + +4.4
1,944,727 + +4.2
1,944,727 + +4.9
1,944,728 - +3.3
1,944,728 - +4.9
1,944,751 + +4.3
1,944,751 + +4.2
1,944,751 + +4.5
1,944,751 + +4.5
1,944,751 + +4.3
1,944,752 - +4.3
1,944,752 - +3.8
1,944,752 - +4.0
1,944,752 - +3.7
1,944,752 - +4.1
1,944,774 + +4.6
1,944,775 - +4.5
1,944,782 + +4.5
1,944,782 + +4.5
1,944,782 + +4.4
1,944,782 + +4.4
1,944,782 + +4.5
1,944,782 + +4.3
1,944,782 + +3.9
1,944,782 + +4.4
1,944,782 + +4.5
1,944,783 - +3.9
1,944,783 - +4.0
1,944,783 - +4.3
1,944,783 - +4.3
1,944,783 - +4.2
1,944,783 - +3.9
1,944,783 - +4.3
1,944,783 - +3.9
1,944,783 - +4.1
1,944,783 - +4.3
1,944,783 - +3.8
1,944,783 - +3.7
1,944,783 - +3.8
1,944,783 - +3.2
1,944,826 + +3.0
1,944,826 + +3.2
1,944,826 + +3.5
1,944,827 - +0.2
1,944,923 + +0.0
1,944,973 + -0.4
1,945,123 + +0.0
1,945,124 - -0.2
1,945,495 + Psest_1841 0.37 +0.7
1,945,495 + Psest_1841 0.37 +0.2
1,945,495 + Psest_1841 0.37 +1.7
1,945,495 + Psest_1841 0.37 -1.5
1,945,495 + Psest_1841 0.37 +0.4
1,945,495 + Psest_1841 0.37 -2.6
1,945,496 - Psest_1841 0.37 -0.4
1,945,496 - Psest_1841 0.37 +2.2
1,945,553 + Psest_1841 0.43 -0.3
1,945,632 + Psest_1841 0.52 +0.7
1,945,633 - Psest_1841 0.52 +0.2
1,945,633 - Psest_1841 0.52 +0.6
1,945,746 - Psest_1841 0.64 +1.2
1,945,810 + Psest_1841 0.71 +0.3
1,945,810 + Psest_1841 0.71 +0.7
1,945,810 + Psest_1841 0.71 -2.9
1,945,810 + Psest_1841 0.71 +0.7
1,945,810 + Psest_1841 0.71 +0.7
1,945,810 + Psest_1841 0.71 -0.4
1,945,810 + Psest_1841 0.71 -0.1
1,945,810 + Psest_1841 0.71 +0.1
1,945,810 + Psest_1841 0.71 +0.5
1,945,810 + Psest_1841 0.71 +0.5
1,945,810 + Psest_1841 0.71 +0.1
1,945,810 + Psest_1841 0.71 +0.5
1,945,810 + Psest_1841 0.71 +0.8
1,945,810 + Psest_1841 0.71 +0.6
1,945,810 + Psest_1841 0.71 +1.6
1,945,810 + Psest_1841 0.71 +0.6
1,945,810 + Psest_1841 0.71 -2.3
1,945,810 + Psest_1841 0.71 +0.2
1,945,810 + Psest_1841 0.71 +0.7
1,945,810 + Psest_1841 0.71 +0.7
1,945,811 - Psest_1841 0.72 +0.8
1,945,811 - Psest_1841 0.72 +0.3
1,945,811 - Psest_1841 0.72 +0.1
1,945,811 - Psest_1841 0.72 +0.2
1,945,811 - Psest_1841 0.72 +1.0
1,945,811 - Psest_1841 0.72 +0.5
1,945,811 - Psest_1841 0.72 -0.3
1,945,811 - Psest_1841 0.72 +0.5
1,945,811 - Psest_1841 0.72 +2.0
1,945,814 + Psest_1841 0.72 +0.9
1,945,814 + Psest_1841 0.72 +1.1
1,945,814 + Psest_1841 0.72 +0.1
1,945,814 + Psest_1841 0.72 -0.0
1,945,815 - Psest_1841 0.72 -0.4
1,945,815 - Psest_1841 0.72 +0.9
1,945,861 + Psest_1841 0.77 +0.4
1,945,861 + Psest_1841 0.77 +1.8
1,945,861 + Psest_1841 0.77 +0.8
1,945,861 + Psest_1841 0.77 +0.3
1,945,861 + Psest_1841 0.77 -0.2
1,945,862 - Psest_1841 0.77 -0.3
1,945,862 - Psest_1841 0.77 -0.5
1,945,862 - Psest_1841 0.77 -2.4
1,946,120 + +1.3
1,946,120 + +2.0
1,946,150 + -0.3
1,946,150 + -0.3
1,946,151 - +1.7
1,946,347 + Psest_1842 0.18 -3.2
1,946,347 + Psest_1842 0.18 +0.6
1,946,348 - Psest_1842 0.18 -1.1
1,946,468 + Psest_1842 0.31 +1.9
1,946,468 + Psest_1842 0.31 +0.6
1,946,469 - Psest_1842 0.31 -0.3
1,946,574 - Psest_1842 0.42 -2.8
1,946,655 - Psest_1842 0.51 -1.7
1,946,966 + Psest_1842 0.84 +0.2
1,946,966 + Psest_1842 0.84 +0.7
1,946,966 + Psest_1842 0.84 +0.1
1,946,966 + Psest_1842 0.84 +0.6
1,946,966 + Psest_1842 0.84 +1.4
1,946,966 + Psest_1842 0.84 -0.2
1,946,966 + Psest_1842 0.84 -0.0
1,946,966 + Psest_1842 0.84 +1.0
1,946,967 - Psest_1842 0.84 -0.6
1,946,967 - Psest_1842 0.84 -0.3
1,946,967 - Psest_1842 0.84 -2.0
1,946,967 - Psest_1842 0.84 +0.2
1,946,967 - Psest_1842 0.84 -0.1
1,946,967 - Psest_1842 0.84 -0.5
1,946,967 - Psest_1842 0.84 -0.6
1,946,974 - Psest_1842 0.85 +1.3

Or see this region's nucleotide sequence