Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1748 and HP15_1749 overlap by 8 nucleotides HP15_1749 and HP15_1750 overlap by 4 nucleotides
HP15_1748: HP15_1748 - cysteine/glutathione ABC transporter membrane/ATP-binding component, at 1,846,770 to 1,848,482
_1748
HP15_1749: HP15_1749 - transport ATP-binding protein CydC, at 1,848,475 to 1,850,091
_1749
HP15_1750: HP15_1750 - saccharopine dehydrogenase-like protein, at 1,850,088 to 1,851,329
_1750
Position (kb)
1848
1849
1850
1851 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1847.635 kb on + strand, within HP15_1748 at 1847.643 kb on - strand, within HP15_1748 at 1847.646 kb on + strand, within HP15_1748 at 1847.809 kb on + strand, within HP15_1748 at 1847.817 kb on - strand, within HP15_1748 at 1847.817 kb on - strand, within HP15_1748 at 1848.026 kb on - strand, within HP15_1748 at 1848.069 kb on + strand, within HP15_1748 at 1848.169 kb on - strand, within HP15_1748 at 1848.201 kb on - strand, within HP15_1748 at 1848.239 kb on - strand, within HP15_1748 at 1848.388 kb on + strand at 1848.401 kb on - strand at 1848.467 kb on + strand at 1848.475 kb on - strand at 1848.627 kb on + strand at 1848.707 kb on - strand, within HP15_1749 at 1848.717 kb on - strand, within HP15_1749 at 1848.717 kb on - strand, within HP15_1749 at 1848.823 kb on - strand, within HP15_1749 at 1848.833 kb on - strand, within HP15_1749 at 1848.918 kb on - strand, within HP15_1749 at 1849.035 kb on + strand, within HP15_1749 at 1849.035 kb on + strand, within HP15_1749 at 1849.123 kb on + strand, within HP15_1749 at 1849.185 kb on + strand, within HP15_1749 at 1849.193 kb on - strand, within HP15_1749 at 1849.233 kb on + strand, within HP15_1749 at 1849.234 kb on + strand, within HP15_1749 at 1849.294 kb on - strand, within HP15_1749 at 1849.304 kb on - strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.373 kb on - strand, within HP15_1749 at 1849.565 kb on - strand, within HP15_1749 at 1849.565 kb on - strand, within HP15_1749 at 1849.688 kb on + strand, within HP15_1749 at 1849.696 kb on - strand, within HP15_1749 at 1849.826 kb on + strand, within HP15_1749 at 1849.830 kb on - strand, within HP15_1749 at 1849.935 kb on - strand at 1849.947 kb on + strand at 1850.173 kb on + strand at 1850.181 kb on - strand at 1850.181 kb on - strand at 1850.181 kb on - strand at 1850.187 kb on + strand at 1850.190 kb on - strand at 1850.525 kb on - strand, within HP15_1750 at 1850.559 kb on - strand, within HP15_1750 at 1850.570 kb on + strand, within HP15_1750 at 1850.600 kb on - strand, within HP15_1750 at 1850.608 kb on - strand, within HP15_1750 at 1850.794 kb on + strand, within HP15_1750 at 1850.926 kb on - strand, within HP15_1750 at 1850.995 kb on - strand, within HP15_1750 at 1851.001 kb on + strand, within HP15_1750 at 1851.019 kb on - strand, within HP15_1750 at 1851.027 kb on - strand, within HP15_1750 at 1851.086 kb on - strand, within HP15_1750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 1,847,635 + HP15_1748 0.50 -2.1 1,847,643 - HP15_1748 0.51 -3.0 1,847,646 + HP15_1748 0.51 -2.5 1,847,809 + HP15_1748 0.61 -3.6 1,847,817 - HP15_1748 0.61 -3.9 1,847,817 - HP15_1748 0.61 -4.2 1,848,026 - HP15_1748 0.73 -2.1 1,848,069 + HP15_1748 0.76 -2.5 1,848,169 - HP15_1748 0.82 -3.6 1,848,201 - HP15_1748 0.84 -3.2 1,848,239 - HP15_1748 0.86 -6.0 1,848,388 + -5.3 1,848,401 - -1.5 1,848,467 + -0.1 1,848,475 - -1.6 1,848,627 + -4.5 1,848,707 - HP15_1749 0.14 -5.8 1,848,717 - HP15_1749 0.15 -4.7 1,848,717 - HP15_1749 0.15 -4.8 1,848,823 - HP15_1749 0.22 -2.8 1,848,833 - HP15_1749 0.22 -5.1 1,848,918 - HP15_1749 0.27 -2.5 1,849,035 + HP15_1749 0.35 -2.3 1,849,035 + HP15_1749 0.35 -1.5 1,849,123 + HP15_1749 0.40 -3.9 1,849,185 + HP15_1749 0.44 -4.5 1,849,193 - HP15_1749 0.44 -4.9 1,849,233 + HP15_1749 0.47 -3.4 1,849,234 + HP15_1749 0.47 -0.5 1,849,294 - HP15_1749 0.51 -2.8 1,849,304 - HP15_1749 0.51 -4.5 1,849,365 + HP15_1749 0.55 -2.1 1,849,365 + HP15_1749 0.55 -2.9 1,849,365 + HP15_1749 0.55 -4.2 1,849,373 - HP15_1749 0.56 -2.9 1,849,565 - HP15_1749 0.67 -4.2 1,849,565 - HP15_1749 0.67 -3.4 1,849,688 + HP15_1749 0.75 -3.6 1,849,696 - HP15_1749 0.76 -2.2 1,849,826 + HP15_1749 0.84 -5.4 1,849,830 - HP15_1749 0.84 -0.5 1,849,935 - -3.4 1,849,947 + -3.2 1,850,173 + -0.4 1,850,181 - -0.5 1,850,181 - -1.1 1,850,181 - +0.3 1,850,187 + +0.1 1,850,190 - +1.5 1,850,525 - HP15_1750 0.35 +0.1 1,850,559 - HP15_1750 0.38 +0.2 1,850,570 + HP15_1750 0.39 +0.8 1,850,600 - HP15_1750 0.41 -0.1 1,850,608 - HP15_1750 0.42 +0.1 1,850,794 + HP15_1750 0.57 +0.4 1,850,926 - HP15_1750 0.67 -1.1 1,850,995 - HP15_1750 0.73 -0.4 1,851,001 + HP15_1750 0.74 -0.5 1,851,019 - HP15_1750 0.75 +0.8 1,851,027 - HP15_1750 0.76 +0.1 1,851,086 - HP15_1750 0.80 -1.1
Or see this region's nucleotide sequence