Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1721

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1720 and Psest_1721 are separated by 19 nucleotidesPsest_1721 and Psest_1722 overlap by 11 nucleotides Psest_1720: Psest_1720 - flagellar motor switch protein FliG, at 1,826,830 to 1,827,846 _1720 Psest_1721: Psest_1721 - Flagellar biosynthesis/type III secretory pathway protein, at 1,827,866 to 1,828,642 _1721 Psest_1722: Psest_1722 - flagellar protein export ATPase FliI, at 1,828,632 to 1,829,990 _1722 Position (kb) 1827 1828 1829Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.074 kb on - strand, within Psest_1720at 1827.136 kb on - strand, within Psest_1720at 1827.153 kb on + strand, within Psest_1720at 1827.251 kb on - strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.426 kb on - strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.815 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.844 kb on + strandat 1827.845 kb on - strandat 1827.845 kb on - strandat 1827.852 kb on + strandat 1827.861 kb on + strandat 1828.088 kb on + strand, within Psest_1721at 1828.088 kb on + strand, within Psest_1721at 1828.089 kb on - strand, within Psest_1721at 1828.089 kb on - strand, within Psest_1721at 1828.140 kb on + strand, within Psest_1721at 1828.674 kb on + strandat 1828.675 kb on - strandat 1828.809 kb on + strand, within Psest_1722at 1828.809 kb on + strand, within Psest_1722at 1828.809 kb on + strand, within Psest_1722at 1828.809 kb on + strand, within Psest_1722at 1828.810 kb on - strand, within Psest_1722at 1828.863 kb on + strand, within Psest_1722at 1828.863 kb on + strand, within Psest_1722at 1828.863 kb on + strand, within Psest_1722at 1829.364 kb on + strand, within Psest_1722at 1829.364 kb on + strand, within Psest_1722at 1829.364 kb on + strand, within Psest_1722at 1829.385 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.586 kb on + strand, within Psest_1722at 1829.587 kb on - strand, within Psest_1722at 1829.587 kb on - strand, within Psest_1722at 1829.588 kb on + strand, within Psest_1722at 1829.593 kb on + strand, within Psest_1722at 1829.593 kb on + strand, within Psest_1722at 1829.593 kb on + strand, within Psest_1722at 1829.593 kb on + strand, within Psest_1722

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,827,073 + Psest_1720 0.24 +2.4
1,827,073 + Psest_1720 0.24 +2.8
1,827,073 + Psest_1720 0.24 +2.7
1,827,073 + Psest_1720 0.24 +3.2
1,827,074 - Psest_1720 0.24 +2.1
1,827,136 - Psest_1720 0.30 +0.7
1,827,153 + Psest_1720 0.32 +0.8
1,827,251 - Psest_1720 0.41 +3.0
1,827,425 + Psest_1720 0.59 +1.8
1,827,425 + Psest_1720 0.59 +1.9
1,827,425 + Psest_1720 0.59 +3.0
1,827,426 - Psest_1720 0.59 +1.5
1,827,460 + Psest_1720 0.62 +2.5
1,827,460 + Psest_1720 0.62 +3.1
1,827,460 + Psest_1720 0.62 +2.4
1,827,460 + Psest_1720 0.62 +1.7
1,827,460 + Psest_1720 0.62 +1.8
1,827,460 + Psest_1720 0.62 +2.2
1,827,543 + Psest_1720 0.70 +0.9
1,827,543 + Psest_1720 0.70 +0.9
1,827,543 + Psest_1720 0.70 +2.0
1,827,543 + Psest_1720 0.70 +1.8
1,827,543 + Psest_1720 0.70 +1.4
1,827,543 + Psest_1720 0.70 +1.7
1,827,543 + Psest_1720 0.70 +2.2
1,827,543 + Psest_1720 0.70 +2.2
1,827,544 - Psest_1720 0.70 +3.2
1,827,544 - Psest_1720 0.70 +2.7
1,827,544 - Psest_1720 0.70 +1.8
1,827,544 - Psest_1720 0.70 +1.2
1,827,544 - Psest_1720 0.70 +2.2
1,827,544 - Psest_1720 0.70 +2.5
1,827,544 - Psest_1720 0.70 +1.9
1,827,544 - Psest_1720 0.70 +2.2
1,827,544 - Psest_1720 0.70 +1.5
1,827,544 - Psest_1720 0.70 +2.1
1,827,544 - Psest_1720 0.70 +2.5
1,827,544 - Psest_1720 0.70 +1.8
1,827,544 - Psest_1720 0.70 +2.9
1,827,544 - Psest_1720 0.70 +2.4
1,827,815 + -1.0
1,827,844 + -1.7
1,827,844 + +0.5
1,827,844 + +0.8
1,827,844 + -1.4
1,827,844 + +0.8
1,827,844 + -0.8
1,827,844 + -0.8
1,827,844 + +5.0
1,827,844 + -0.4
1,827,844 + -1.6
1,827,845 - +1.7
1,827,845 - +1.2
1,827,852 + +0.5
1,827,861 + -0.9
1,828,088 + Psest_1721 0.29 +2.2
1,828,088 + Psest_1721 0.29 +1.6
1,828,089 - Psest_1721 0.29 +1.9
1,828,089 - Psest_1721 0.29 +2.0
1,828,140 + Psest_1721 0.35 +0.0
1,828,674 + +1.1
1,828,675 - +0.4
1,828,809 + Psest_1722 0.13 +1.7
1,828,809 + Psest_1722 0.13 +2.2
1,828,809 + Psest_1722 0.13 +2.8
1,828,809 + Psest_1722 0.13 +1.8
1,828,810 - Psest_1722 0.13 +2.5
1,828,863 + Psest_1722 0.17 +2.5
1,828,863 + Psest_1722 0.17 +3.5
1,828,863 + Psest_1722 0.17 +2.1
1,829,364 + Psest_1722 0.54 +1.6
1,829,364 + Psest_1722 0.54 +2.6
1,829,364 + Psest_1722 0.54 +1.4
1,829,385 + Psest_1722 0.55 +0.2
1,829,586 + Psest_1722 0.70 +2.4
1,829,586 + Psest_1722 0.70 +2.2
1,829,586 + Psest_1722 0.70 +1.4
1,829,586 + Psest_1722 0.70 +1.8
1,829,586 + Psest_1722 0.70 +1.0
1,829,586 + Psest_1722 0.70 +1.2
1,829,586 + Psest_1722 0.70 +2.2
1,829,586 + Psest_1722 0.70 +1.4
1,829,587 - Psest_1722 0.70 -0.9
1,829,587 - Psest_1722 0.70 -0.1
1,829,588 + Psest_1722 0.70 +2.4
1,829,593 + Psest_1722 0.71 +2.2
1,829,593 + Psest_1722 0.71 +1.2
1,829,593 + Psest_1722 0.71 +1.4
1,829,593 + Psest_1722 0.71 +2.1

Or see this region's nucleotide sequence