Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1599

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1597 and Psest_1598 are separated by 155 nucleotidesPsest_1598 and Psest_1599 overlap by 4 nucleotidesPsest_1599 and Psest_1600 are separated by 8 nucleotidesPsest_1600 and Psest_1601 are separated by 81 nucleotides Psest_1597: Psest_1597 - Protein of unknown function (DUF2933)., at 1,701,530 to 1,701,760 _1597 Psest_1598: Psest_1598 - heavy metal response regulator, at 1,701,916 to 1,702,599 _1598 Psest_1599: Psest_1599 - heavy metal sensor kinase, at 1,702,596 to 1,703,960 _1599 Psest_1600: Psest_1600 - hypothetical protein, at 1,703,969 to 1,704,421 _1600 Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825 _1601 Position (kb) 1702 1703 1704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.664 kb on - strand, within Psest_1597at 1701.664 kb on - strand, within Psest_1597at 1701.796 kb on + strandat 1701.797 kb on - strandat 1701.806 kb on - strandat 1701.842 kb on + strandat 1701.843 kb on - strandat 1701.843 kb on - strandat 1701.870 kb on + strandat 1701.958 kb on + strandat 1701.959 kb on - strandat 1701.959 kb on - strandat 1701.959 kb on - strandat 1702.048 kb on + strand, within Psest_1598at 1702.207 kb on + strand, within Psest_1598at 1702.207 kb on + strand, within Psest_1598at 1702.208 kb on - strand, within Psest_1598at 1702.255 kb on - strand, within Psest_1598at 1702.359 kb on + strand, within Psest_1598at 1702.360 kb on - strand, within Psest_1598at 1702.570 kb on + strandat 1702.570 kb on + strandat 1702.570 kb on + strandat 1702.571 kb on - strandat 1702.571 kb on - strandat 1702.724 kb on + strandat 1702.725 kb on - strandat 1703.406 kb on + strand, within Psest_1599at 1703.407 kb on - strand, within Psest_1599at 1703.552 kb on - strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.846 kb on + strandat 1703.879 kb on + strandat 1704.352 kb on + strand, within Psest_1600at 1704.353 kb on - strand, within Psest_1600at 1704.445 kb on + strandat 1704.446 kb on - strandat 1704.446 kb on - strandat 1704.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,701,663 + Psest_1597 0.58 +2.9
1,701,663 + Psest_1597 0.58 -0.7
1,701,663 + Psest_1597 0.58 -0.2
1,701,663 + Psest_1597 0.58 -2.1
1,701,664 - Psest_1597 0.58 -0.0
1,701,664 - Psest_1597 0.58 -1.9
1,701,796 + -0.9
1,701,797 - -1.0
1,701,806 - +0.8
1,701,842 + -0.7
1,701,843 - +0.4
1,701,843 - -0.9
1,701,870 + -2.5
1,701,958 + -1.1
1,701,959 - -1.9
1,701,959 - -1.8
1,701,959 - -0.7
1,702,048 + Psest_1598 0.19 +0.1
1,702,207 + Psest_1598 0.43 -0.6
1,702,207 + Psest_1598 0.43 +0.0
1,702,208 - Psest_1598 0.43 -0.2
1,702,255 - Psest_1598 0.50 +0.4
1,702,359 + Psest_1598 0.65 -2.6
1,702,360 - Psest_1598 0.65 -1.2
1,702,570 + +0.1
1,702,570 + -0.6
1,702,570 + -0.5
1,702,571 - -1.4
1,702,571 - -3.4
1,702,724 + -1.7
1,702,725 - -1.6
1,703,406 + Psest_1599 0.59 -0.6
1,703,407 - Psest_1599 0.59 -1.1
1,703,552 - Psest_1599 0.70 -1.5
1,703,559 + Psest_1599 0.71 -0.4
1,703,559 + Psest_1599 0.71 -1.9
1,703,559 + Psest_1599 0.71 -1.0
1,703,560 - Psest_1599 0.71 -1.1
1,703,560 - Psest_1599 0.71 -0.3
1,703,560 - Psest_1599 0.71 -1.7
1,703,563 - Psest_1599 0.71 -2.3
1,703,563 - Psest_1599 0.71 -0.6
1,703,563 - Psest_1599 0.71 -0.3
1,703,846 + -1.6
1,703,879 + +0.9
1,704,352 + Psest_1600 0.85 -2.5
1,704,353 - Psest_1600 0.85 +0.7
1,704,445 + -1.7
1,704,446 - +3.4
1,704,446 - -0.6
1,704,634 + -1.8

Or see this region's nucleotide sequence