Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1583 and Psest_1584 are separated by 163 nucleotides Psest_1584 and Psest_1585 are separated by 44 nucleotides
Psest_1583: Psest_1583 - outer membrane porin, OprD family., at 1,687,160 to 1,688,410
_1583
Psest_1584: Psest_1584 - Arabinose efflux permease, at 1,688,574 to 1,689,932
_1584
Psest_1585: Psest_1585 - amidohydrolase, at 1,689,977 to 1,691,248
_1585
Position (kb)
1688
1689
1690 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1687.650 kb on + strand, within Psest_1583 at 1687.650 kb on + strand, within Psest_1583 at 1687.650 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.693 kb on + strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.694 kb on - strand, within Psest_1583 at 1687.696 kb on + strand, within Psest_1583 at 1687.696 kb on + strand, within Psest_1583 at 1687.726 kb on - strand, within Psest_1583 at 1687.729 kb on + strand, within Psest_1583 at 1687.729 kb on + strand, within Psest_1583 at 1687.729 kb on + strand, within Psest_1583 at 1687.730 kb on - strand, within Psest_1583 at 1687.730 kb on - strand, within Psest_1583 at 1687.749 kb on + strand, within Psest_1583 at 1687.749 kb on + strand, within Psest_1583 at 1687.752 kb on + strand, within Psest_1583 at 1687.752 kb on + strand, within Psest_1583 at 1687.753 kb on - strand, within Psest_1583 at 1687.753 kb on - strand, within Psest_1583 at 1687.753 kb on - strand, within Psest_1583 at 1687.753 kb on - strand, within Psest_1583 at 1687.753 kb on - strand, within Psest_1583 at 1688.055 kb on + strand, within Psest_1583 at 1688.056 kb on - strand, within Psest_1583 at 1688.277 kb on + strand, within Psest_1583 at 1688.277 kb on + strand, within Psest_1583 at 1688.281 kb on - strand, within Psest_1583 at 1688.281 kb on - strand, within Psest_1583 at 1688.281 kb on - strand, within Psest_1583 at 1688.417 kb on + strand at 1688.417 kb on + strand at 1688.731 kb on + strand, within Psest_1584 at 1688.731 kb on + strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.732 kb on - strand, within Psest_1584 at 1688.824 kb on + strand, within Psest_1584 at 1688.919 kb on + strand, within Psest_1584 at 1688.919 kb on + strand, within Psest_1584 at 1688.919 kb on + strand, within Psest_1584 at 1688.919 kb on + strand, within Psest_1584 at 1688.920 kb on - strand, within Psest_1584 at 1689.164 kb on - strand, within Psest_1584 at 1689.164 kb on - strand, within Psest_1584 at 1689.178 kb on + strand, within Psest_1584 at 1689.178 kb on + strand, within Psest_1584 at 1689.178 kb on + strand, within Psest_1584 at 1689.179 kb on - strand, within Psest_1584 at 1689.179 kb on - strand, within Psest_1584 at 1689.179 kb on - strand, within Psest_1584 at 1689.179 kb on - strand, within Psest_1584 at 1689.447 kb on + strand, within Psest_1584 at 1689.447 kb on + strand, within Psest_1584 at 1689.448 kb on - strand, within Psest_1584 at 1689.484 kb on + strand, within Psest_1584 at 1689.709 kb on + strand, within Psest_1584 at 1689.709 kb on + strand, within Psest_1584 at 1689.710 kb on - strand, within Psest_1584 at 1689.710 kb on - strand, within Psest_1584 at 1689.710 kb on - strand, within Psest_1584 at 1689.710 kb on - strand, within Psest_1584 at 1689.790 kb on + strand, within Psest_1584 at 1689.790 kb on + strand, within Psest_1584 at 1689.791 kb on - strand, within Psest_1584 at 1689.791 kb on - strand, within Psest_1584 at 1689.955 kb on + strand at 1689.956 kb on - strand at 1690.054 kb on - strand at 1690.132 kb on - strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.434 kb on + strand, within Psest_1585 at 1690.435 kb on - strand, within Psest_1585 at 1690.435 kb on - strand, within Psest_1585 at 1690.435 kb on - strand, within Psest_1585 at 1690.435 kb on - strand, within Psest_1585 at 1690.561 kb on + strand, within Psest_1585 at 1690.608 kb on - strand, within Psest_1585 at 1690.674 kb on + strand, within Psest_1585
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,687,650 + Psest_1583 0.39 -0.5 1,687,650 + Psest_1583 0.39 -0.6 1,687,650 + Psest_1583 0.39 -0.0 1,687,693 + Psest_1583 0.43 -0.2 1,687,693 + Psest_1583 0.43 -0.4 1,687,693 + Psest_1583 0.43 +0.6 1,687,693 + Psest_1583 0.43 -0.2 1,687,693 + Psest_1583 0.43 -0.4 1,687,693 + Psest_1583 0.43 -2.1 1,687,693 + Psest_1583 0.43 -3.5 1,687,694 - Psest_1583 0.43 +0.1 1,687,694 - Psest_1583 0.43 -1.7 1,687,694 - Psest_1583 0.43 +1.6 1,687,694 - Psest_1583 0.43 +0.5 1,687,694 - Psest_1583 0.43 -1.7 1,687,694 - Psest_1583 0.43 -1.4 1,687,694 - Psest_1583 0.43 -0.1 1,687,696 + Psest_1583 0.43 +0.3 1,687,696 + Psest_1583 0.43 -2.2 1,687,726 - Psest_1583 0.45 +0.2 1,687,729 + Psest_1583 0.45 -0.5 1,687,729 + Psest_1583 0.45 -0.7 1,687,729 + Psest_1583 0.45 +0.2 1,687,730 - Psest_1583 0.46 -1.5 1,687,730 - Psest_1583 0.46 -0.7 1,687,749 + Psest_1583 0.47 -1.4 1,687,749 + Psest_1583 0.47 -0.5 1,687,752 + Psest_1583 0.47 +0.9 1,687,752 + Psest_1583 0.47 +0.7 1,687,753 - Psest_1583 0.47 +0.5 1,687,753 - Psest_1583 0.47 -2.0 1,687,753 - Psest_1583 0.47 -2.2 1,687,753 - Psest_1583 0.47 -0.2 1,687,753 - Psest_1583 0.47 -2.1 1,688,055 + Psest_1583 0.72 -0.3 1,688,056 - Psest_1583 0.72 -0.9 1,688,277 + Psest_1583 0.89 -1.5 1,688,277 + Psest_1583 0.89 +0.6 1,688,281 - Psest_1583 0.90 +1.0 1,688,281 - Psest_1583 0.90 -0.3 1,688,281 - Psest_1583 0.90 +1.3 1,688,417 + -0.9 1,688,417 + +0.4 1,688,731 + Psest_1584 0.12 -0.7 1,688,731 + Psest_1584 0.12 +0.7 1,688,732 - Psest_1584 0.12 +1.5 1,688,732 - Psest_1584 0.12 -2.6 1,688,732 - Psest_1584 0.12 -1.7 1,688,732 - Psest_1584 0.12 -1.4 1,688,732 - Psest_1584 0.12 -0.4 1,688,732 - Psest_1584 0.12 +0.5 1,688,732 - Psest_1584 0.12 +1.5 1,688,732 - Psest_1584 0.12 -0.2 1,688,824 + Psest_1584 0.18 -2.0 1,688,919 + Psest_1584 0.25 -1.4 1,688,919 + Psest_1584 0.25 +3.0 1,688,919 + Psest_1584 0.25 +0.8 1,688,919 + Psest_1584 0.25 -0.4 1,688,920 - Psest_1584 0.25 -2.0 1,689,164 - Psest_1584 0.43 -0.0 1,689,164 - Psest_1584 0.43 -0.3 1,689,178 + Psest_1584 0.44 -1.5 1,689,178 + Psest_1584 0.44 -0.7 1,689,178 + Psest_1584 0.44 +0.4 1,689,179 - Psest_1584 0.45 -1.5 1,689,179 - Psest_1584 0.45 +0.9 1,689,179 - Psest_1584 0.45 +0.7 1,689,179 - Psest_1584 0.45 -0.1 1,689,447 + Psest_1584 0.64 -2.5 1,689,447 + Psest_1584 0.64 -2.4 1,689,448 - Psest_1584 0.64 -1.8 1,689,484 + Psest_1584 0.67 +0.6 1,689,709 + Psest_1584 0.84 +0.1 1,689,709 + Psest_1584 0.84 -0.1 1,689,710 - Psest_1584 0.84 -1.2 1,689,710 - Psest_1584 0.84 +0.1 1,689,710 - Psest_1584 0.84 -0.1 1,689,710 - Psest_1584 0.84 -1.2 1,689,790 + Psest_1584 0.89 -0.3 1,689,790 + Psest_1584 0.89 -1.8 1,689,791 - Psest_1584 0.90 -1.1 1,689,791 - Psest_1584 0.90 +0.4 1,689,955 + -0.6 1,689,956 - +0.7 1,690,054 - -0.8 1,690,132 - Psest_1585 0.12 +1.1 1,690,434 + Psest_1585 0.36 -0.8 1,690,434 + Psest_1585 0.36 -0.3 1,690,434 + Psest_1585 0.36 -1.0 1,690,434 + Psest_1585 0.36 +0.7 1,690,434 + Psest_1585 0.36 +0.7 1,690,434 + Psest_1585 0.36 +0.1 1,690,434 + Psest_1585 0.36 +1.6 1,690,434 + Psest_1585 0.36 +0.4 1,690,434 + Psest_1585 0.36 -0.2 1,690,435 - Psest_1585 0.36 +0.2 1,690,435 - Psest_1585 0.36 -0.9 1,690,435 - Psest_1585 0.36 -1.4 1,690,435 - Psest_1585 0.36 +0.9 1,690,561 + Psest_1585 0.46 +0.1 1,690,608 - Psest_1585 0.50 -1.7 1,690,674 + Psest_1585 0.55 -1.9
Or see this region's nucleotide sequence