Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1449

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1447 and Psest_1448 are separated by 75 nucleotidesPsest_1448 and Psest_1449 are separated by 80 nucleotidesPsest_1449 and Psest_1450 are separated by 8 nucleotides Psest_1447: Psest_1447 - Putative threonine efflux protein, at 1,556,137 to 1,556,772 _1447 Psest_1448: Psest_1448 - Uncharacterized protein conserved in bacteria, at 1,556,848 to 1,557,303 _1448 Psest_1449: Psest_1449 - Short-chain dehydrogenases of various substrate specificities, at 1,557,384 to 1,558,358 _1449 Psest_1450: Psest_1450 - Transcriptional regulator, at 1,558,367 to 1,559,293 _1450 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1556.384 kb on - strand, within Psest_1447at 1556.533 kb on - strand, within Psest_1447at 1556.602 kb on - strand, within Psest_1447at 1556.847 kb on + strandat 1556.847 kb on + strandat 1556.847 kb on + strandat 1556.847 kb on + strandat 1556.847 kb on + strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1556.848 kb on - strandat 1557.053 kb on - strand, within Psest_1448at 1557.105 kb on + strand, within Psest_1448at 1557.105 kb on + strand, within Psest_1448at 1557.105 kb on + strand, within Psest_1448at 1557.106 kb on - strand, within Psest_1448at 1557.106 kb on - strand, within Psest_1448at 1557.109 kb on + strand, within Psest_1448at 1557.109 kb on + strand, within Psest_1448at 1557.109 kb on + strand, within Psest_1448at 1557.109 kb on + strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.110 kb on - strand, within Psest_1448at 1557.197 kb on - strand, within Psest_1448at 1557.256 kb on + strand, within Psest_1448at 1557.256 kb on + strand, within Psest_1448at 1557.256 kb on + strand, within Psest_1448at 1557.257 kb on - strand, within Psest_1448at 1557.352 kb on + strandat 1557.352 kb on + strandat 1557.352 kb on + strandat 1557.356 kb on + strandat 1557.356 kb on + strandat 1557.357 kb on - strandat 1557.357 kb on - strandat 1557.357 kb on - strandat 1557.357 kb on - strandat 1557.418 kb on + strandat 1557.745 kb on - strand, within Psest_1449at 1557.774 kb on + strand, within Psest_1449at 1557.775 kb on - strand, within Psest_1449at 1557.932 kb on + strand, within Psest_1449at 1557.933 kb on - strand, within Psest_1449at 1557.933 kb on - strand, within Psest_1449at 1557.933 kb on - strand, within Psest_1449at 1557.933 kb on - strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.990 kb on + strand, within Psest_1449at 1557.991 kb on - strandat 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1557.991 kb on - strand, within Psest_1449at 1558.082 kb on + strand, within Psest_1449at 1559.302 kb on - strandat 1559.302 kb on - strandat 1559.302 kb on - strandat 1559.302 kb on - strandat 1559.302 kb on - strandat 1559.302 kb on - strandat 1559.302 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
1,556,384 - Psest_1447 0.39 -1.7
1,556,533 - Psest_1447 0.62 +0.8
1,556,602 - Psest_1447 0.73 -0.8
1,556,847 + -0.0
1,556,847 + -1.3
1,556,847 + +0.1
1,556,847 + +0.1
1,556,847 + -1.6
1,556,848 - -1.1
1,556,848 - +0.5
1,556,848 - -0.1
1,556,848 - -0.3
1,556,848 - -0.7
1,556,848 - -1.0
1,556,848 - -0.9
1,556,848 - -0.7
1,556,848 - -0.7
1,557,053 - Psest_1448 0.45 -0.7
1,557,105 + Psest_1448 0.56 -1.4
1,557,105 + Psest_1448 0.56 +2.7
1,557,105 + Psest_1448 0.56 +0.7
1,557,106 - Psest_1448 0.57 -1.7
1,557,106 - Psest_1448 0.57 -0.9
1,557,109 + Psest_1448 0.57 -0.3
1,557,109 + Psest_1448 0.57 -2.5
1,557,109 + Psest_1448 0.57 -3.3
1,557,109 + Psest_1448 0.57 -2.0
1,557,110 - Psest_1448 0.57 +1.7
1,557,110 - Psest_1448 0.57 +0.1
1,557,110 - Psest_1448 0.57 -1.5
1,557,110 - Psest_1448 0.57 +1.5
1,557,110 - Psest_1448 0.57 +2.1
1,557,110 - Psest_1448 0.57 +0.1
1,557,110 - Psest_1448 0.57 +1.3
1,557,110 - Psest_1448 0.57 +0.7
1,557,110 - Psest_1448 0.57 +0.3
1,557,110 - Psest_1448 0.57 +0.1
1,557,110 - Psest_1448 0.57 -0.4
1,557,110 - Psest_1448 0.57 -0.3
1,557,110 - Psest_1448 0.57 -1.8
1,557,110 - Psest_1448 0.57 +0.1
1,557,110 - Psest_1448 0.57 -1.6
1,557,110 - Psest_1448 0.57 +0.6
1,557,110 - Psest_1448 0.57 +1.1
1,557,110 - Psest_1448 0.57 -0.3
1,557,110 - Psest_1448 0.57 +0.5
1,557,110 - Psest_1448 0.57 -0.9
1,557,197 - Psest_1448 0.77 +0.2
1,557,256 + Psest_1448 0.89 -1.1
1,557,256 + Psest_1448 0.89 -2.0
1,557,256 + Psest_1448 0.89 +0.7
1,557,257 - Psest_1448 0.90 +0.9
1,557,352 + -1.7
1,557,352 + -0.9
1,557,352 + -0.9
1,557,356 + -0.3
1,557,356 + -2.0
1,557,357 - -1.1
1,557,357 - +0.7
1,557,357 - -0.7
1,557,357 - -0.3
1,557,418 + -1.1
1,557,745 - Psest_1449 0.37 -2.1
1,557,774 + Psest_1449 0.40 +0.3
1,557,775 - Psest_1449 0.40 -2.9
1,557,932 + Psest_1449 0.56 +0.5
1,557,933 - Psest_1449 0.56 -1.1
1,557,933 - Psest_1449 0.56 -0.9
1,557,933 - Psest_1449 0.56 -3.5
1,557,933 - Psest_1449 0.56 +1.3
1,557,990 + Psest_1449 0.62 +0.1
1,557,990 + Psest_1449 0.62 -0.8
1,557,990 + Psest_1449 0.62 -0.3
1,557,990 + Psest_1449 0.62 -2.1
1,557,990 + Psest_1449 0.62 -1.1
1,557,990 + Psest_1449 0.62 +0.2
1,557,990 + Psest_1449 0.62 -1.3
1,557,990 + Psest_1449 0.62 -1.5
1,557,990 + Psest_1449 0.62 -0.8
1,557,991 - +1.7
1,557,991 - Psest_1449 0.62 +0.4
1,557,991 - Psest_1449 0.62 -1.8
1,557,991 - Psest_1449 0.62 -2.0
1,557,991 - Psest_1449 0.62 -2.2
1,557,991 - Psest_1449 0.62 -0.3
1,557,991 - Psest_1449 0.62 -0.6
1,557,991 - Psest_1449 0.62 +0.4
1,557,991 - Psest_1449 0.62 -1.1
1,558,082 + Psest_1449 0.72 -2.1
1,559,302 - +0.9
1,559,302 - -2.0
1,559,302 - +0.1
1,559,302 - +0.1
1,559,302 - -1.8
1,559,302 - -0.4
1,559,302 - -0.9

Or see this region's nucleotide sequence