Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1186 and HP15_1187 are separated by 277 nucleotides HP15_1187 and HP15_1188 overlap by 4 nucleotides HP15_1188 and HP15_1189 are separated by 21 nucleotides HP15_1189 and HP15_1190 are separated by 286 nucleotides
HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853
_1186
HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487
_1187
HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107
_1188
HP15_1189: HP15_1189 - conserved hypothetical protein, at 1,223,129 to 1,223,794
_1189
HP15_1190: HP15_1190 - methyl-accepting chemotaxis sensory transducer, at 1,224,081 to 1,225,706
_1190
Position (kb)
1222
1223
1224 Strain fitness (log2 ratio)
-2
-1
0
1 at 1221.547 kb on + strand, within HP15_1186 at 1221.594 kb on - strand, within HP15_1186 at 1221.598 kb on + strand, within HP15_1186 at 1221.678 kb on + strand at 1221.678 kb on + strand at 1221.784 kb on + strand at 1221.789 kb on + strand at 1221.807 kb on - strand at 1221.857 kb on + strand at 1221.922 kb on - strand at 1221.933 kb on + strand at 1221.950 kb on - strand at 1222.013 kb on + strand at 1222.108 kb on - strand at 1222.113 kb on - strand at 1222.171 kb on - strand, within HP15_1187 at 1222.179 kb on - strand, within HP15_1187 at 1222.553 kb on - strand, within HP15_1188 at 1222.553 kb on - strand, within HP15_1188 at 1222.586 kb on + strand, within HP15_1188 at 1222.689 kb on + strand, within HP15_1188 at 1222.734 kb on - strand, within HP15_1188 at 1222.876 kb on - strand, within HP15_1188 at 1222.876 kb on - strand, within HP15_1188 at 1222.895 kb on - strand, within HP15_1188 at 1222.971 kb on + strand, within HP15_1188 at 1223.024 kb on - strand, within HP15_1188 at 1223.041 kb on - strand, within HP15_1188 at 1223.154 kb on - strand at 1223.216 kb on + strand, within HP15_1189 at 1223.225 kb on - strand, within HP15_1189 at 1223.275 kb on - strand, within HP15_1189 at 1223.284 kb on - strand, within HP15_1189 at 1223.306 kb on - strand, within HP15_1189 at 1223.331 kb on + strand, within HP15_1189 at 1223.350 kb on + strand, within HP15_1189 at 1223.546 kb on + strand, within HP15_1189 at 1223.546 kb on + strand, within HP15_1189 at 1223.588 kb on - strand, within HP15_1189 at 1223.638 kb on - strand, within HP15_1189 at 1223.645 kb on - strand, within HP15_1189 at 1223.645 kb on - strand, within HP15_1189 at 1223.788 kb on - strand at 1223.912 kb on - strand at 1223.916 kb on + strand at 1223.918 kb on - strand at 1223.957 kb on + strand at 1224.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 1,221,547 + HP15_1186 0.86 +0.7 1,221,594 - HP15_1186 0.88 -2.2 1,221,598 + HP15_1186 0.88 -0.4 1,221,678 + -0.1 1,221,678 + +0.9 1,221,784 + -0.1 1,221,789 + -0.5 1,221,807 - +0.3 1,221,857 + +1.0 1,221,922 - -0.2 1,221,933 + +0.2 1,221,950 - -0.2 1,222,013 + +0.1 1,222,108 - -0.9 1,222,113 - -1.1 1,222,171 - HP15_1187 0.11 -1.3 1,222,179 - HP15_1187 0.13 -2.3 1,222,553 - HP15_1188 0.11 -1.2 1,222,553 - HP15_1188 0.11 -0.8 1,222,586 + HP15_1188 0.16 -0.9 1,222,689 + HP15_1188 0.33 -0.8 1,222,734 - HP15_1188 0.40 -1.5 1,222,876 - HP15_1188 0.63 -0.6 1,222,876 - HP15_1188 0.63 +0.8 1,222,895 - HP15_1188 0.66 -1.3 1,222,971 + HP15_1188 0.78 -1.5 1,223,024 - HP15_1188 0.87 -0.7 1,223,041 - HP15_1188 0.89 -1.2 1,223,154 - +0.1 1,223,216 + HP15_1189 0.13 +0.6 1,223,225 - HP15_1189 0.14 +0.5 1,223,275 - HP15_1189 0.22 +0.2 1,223,284 - HP15_1189 0.23 -0.2 1,223,306 - HP15_1189 0.27 -0.4 1,223,331 + HP15_1189 0.30 +0.5 1,223,350 + HP15_1189 0.33 +0.6 1,223,546 + HP15_1189 0.63 +0.9 1,223,546 + HP15_1189 0.63 +0.3 1,223,588 - HP15_1189 0.69 +0.5 1,223,638 - HP15_1189 0.76 -0.1 1,223,645 - HP15_1189 0.77 -1.0 1,223,645 - HP15_1189 0.77 -0.8 1,223,788 - +0.3 1,223,912 - +0.5 1,223,916 + +0.4 1,223,918 - -1.3 1,223,957 + -0.2 1,224,037 - +0.1
Or see this region's nucleotide sequence