Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1209 and Psest_1210 are separated by 101 nucleotides Psest_1210 and Psest_1211 overlap by 8 nucleotides
Psest_1209: Psest_1209 - xanthine dehydrogenase accessory protein XdhC, at 1,312,469 to 1,313,317
_1209
Psest_1210: Psest_1210 - xanthine dehydrogenase, molybdopterin binding subunit, at 1,313,419 to 1,315,815
_1210
Psest_1211: Psest_1211 - xanthine dehydrogenase, small subunit, at 1,315,808 to 1,317,256
_1211
Position (kb)
1313
1314
1315
1316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1312.558 kb on - strand, within Psest_1209 at 1312.558 kb on - strand, within Psest_1209 at 1312.731 kb on + strand, within Psest_1209 at 1312.731 kb on + strand, within Psest_1209 at 1312.732 kb on - strand, within Psest_1209 at 1312.734 kb on + strand, within Psest_1209 at 1312.734 kb on + strand, within Psest_1209 at 1312.735 kb on - strand, within Psest_1209 at 1312.735 kb on - strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.812 kb on + strand, within Psest_1209 at 1312.813 kb on - strand, within Psest_1209 at 1312.813 kb on - strand, within Psest_1209 at 1312.813 kb on - strand, within Psest_1209 at 1313.145 kb on + strand, within Psest_1209 at 1313.146 kb on - strand, within Psest_1209 at 1313.146 kb on - strand, within Psest_1209 at 1313.146 kb on - strand, within Psest_1209 at 1313.146 kb on - strand, within Psest_1209 at 1313.146 kb on - strand, within Psest_1209 at 1313.175 kb on + strand, within Psest_1209 at 1313.176 kb on - strand, within Psest_1209 at 1313.415 kb on + strand at 1313.416 kb on - strand at 1313.416 kb on - strand at 1313.717 kb on + strand, within Psest_1210 at 1313.717 kb on + strand, within Psest_1210 at 1313.717 kb on + strand, within Psest_1210 at 1313.718 kb on - strand, within Psest_1210 at 1313.718 kb on - strand, within Psest_1210 at 1313.885 kb on + strand, within Psest_1210 at 1313.885 kb on + strand, within Psest_1210 at 1313.885 kb on + strand, within Psest_1210 at 1313.885 kb on + strand, within Psest_1210 at 1313.943 kb on - strand, within Psest_1210 at 1313.943 kb on - strand, within Psest_1210 at 1313.943 kb on - strand, within Psest_1210 at 1313.945 kb on + strand, within Psest_1210 at 1313.945 kb on + strand, within Psest_1210 at 1313.945 kb on + strand, within Psest_1210 at 1313.945 kb on + strand, within Psest_1210 at 1313.946 kb on - strand, within Psest_1210 at 1313.946 kb on - strand, within Psest_1210 at 1313.946 kb on - strand, within Psest_1210 at 1313.946 kb on - strand, within Psest_1210 at 1313.946 kb on - strand, within Psest_1210 at 1313.978 kb on + strand, within Psest_1210 at 1313.978 kb on + strand, within Psest_1210 at 1313.978 kb on + strand, within Psest_1210 at 1313.981 kb on + strand, within Psest_1210 at 1313.981 kb on + strand, within Psest_1210 at 1313.981 kb on + strand, within Psest_1210 at 1313.981 kb on + strand, within Psest_1210 at 1313.982 kb on - strand, within Psest_1210 at 1313.982 kb on - strand, within Psest_1210 at 1313.999 kb on + strand, within Psest_1210 at 1314.035 kb on + strand, within Psest_1210 at 1314.035 kb on + strand, within Psest_1210 at 1314.036 kb on - strand, within Psest_1210 at 1314.036 kb on - strand, within Psest_1210 at 1314.068 kb on + strand, within Psest_1210 at 1314.069 kb on - strand, within Psest_1210 at 1314.069 kb on - strand, within Psest_1210 at 1314.069 kb on - strand, within Psest_1210 at 1314.324 kb on + strand, within Psest_1210 at 1314.324 kb on + strand, within Psest_1210 at 1314.534 kb on + strand, within Psest_1210 at 1314.587 kb on + strand, within Psest_1210 at 1314.587 kb on + strand, within Psest_1210 at 1314.588 kb on - strand, within Psest_1210 at 1314.590 kb on + strand, within Psest_1210 at 1314.590 kb on + strand, within Psest_1210 at 1314.590 kb on + strand, within Psest_1210 at 1314.591 kb on - strand, within Psest_1210 at 1314.620 kb on + strand, within Psest_1210 at 1314.620 kb on + strand, within Psest_1210 at 1314.623 kb on + strand, within Psest_1210 at 1314.623 kb on + strand, within Psest_1210 at 1314.624 kb on - strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.791 kb on + strand, within Psest_1210 at 1314.792 kb on - strand, within Psest_1210 at 1314.794 kb on + strand, within Psest_1210 at 1314.794 kb on + strand, within Psest_1210 at 1314.794 kb on + strand, within Psest_1210 at 1314.916 kb on + strand, within Psest_1210 at 1314.916 kb on + strand, within Psest_1210 at 1314.916 kb on + strand, within Psest_1210 at 1314.916 kb on + strand, within Psest_1210 at 1314.917 kb on - strand, within Psest_1210 at 1314.923 kb on + strand, within Psest_1210 at 1314.923 kb on + strand, within Psest_1210 at 1314.933 kb on - strand, within Psest_1210 at 1314.933 kb on - strand, within Psest_1210 at 1314.933 kb on - strand, within Psest_1210 at 1315.172 kb on + strand, within Psest_1210 at 1315.173 kb on - strand, within Psest_1210 at 1315.229 kb on + strand, within Psest_1210 at 1315.392 kb on - strand, within Psest_1210 at 1315.472 kb on + strand, within Psest_1210 at 1315.472 kb on + strand, within Psest_1210 at 1315.472 kb on + strand, within Psest_1210 at 1315.473 kb on - strand, within Psest_1210 at 1315.473 kb on - strand, within Psest_1210 at 1315.583 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.643 kb on + strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.644 kb on - strand at 1315.647 kb on + strand at 1315.647 kb on + strand at 1315.647 kb on + strand at 1315.647 kb on + strand at 1315.647 kb on + strand at 1315.647 kb on + strand at 1315.648 kb on - strand at 1315.648 kb on - strand at 1315.648 kb on - strand at 1315.685 kb on + strand at 1315.685 kb on + strand at 1315.685 kb on + strand at 1315.685 kb on + strand at 1315.685 kb on + strand at 1315.686 kb on - strand at 1315.686 kb on - strand at 1315.686 kb on - strand at 1315.686 kb on - strand at 1315.686 kb on - strand at 1315.686 kb on - strand at 1315.742 kb on - strand at 1315.801 kb on + strand at 1315.801 kb on + strand at 1315.802 kb on - strand at 1315.810 kb on - strand at 1315.810 kb on - strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.815 kb on + strand at 1315.816 kb on - strand at 1316.119 kb on + strand, within Psest_1211 at 1316.120 kb on - strand, within Psest_1211 at 1316.148 kb on + strand, within Psest_1211 at 1316.148 kb on + strand, within Psest_1211 at 1316.149 kb on - strand, within Psest_1211 at 1316.232 kb on + strand, within Psest_1211 at 1316.232 kb on + strand, within Psest_1211 at 1316.233 kb on - strand, within Psest_1211 at 1316.233 kb on - strand, within Psest_1211 at 1316.245 kb on - strand, within Psest_1211 at 1316.245 kb on - strand, within Psest_1211 at 1316.245 kb on - strand, within Psest_1211 at 1316.448 kb on + strand, within Psest_1211 at 1316.535 kb on + strand, within Psest_1211 at 1316.535 kb on + strand, within Psest_1211 at 1316.535 kb on + strand, within Psest_1211 at 1316.535 kb on + strand, within Psest_1211 at 1316.535 kb on + strand, within Psest_1211 at 1316.536 kb on - strand, within Psest_1211 at 1316.536 kb on - strand, within Psest_1211 at 1316.536 kb on - strand, within Psest_1211 at 1316.544 kb on - strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.628 kb on + strand, within Psest_1211 at 1316.629 kb on - strand, within Psest_1211 at 1316.629 kb on - strand, within Psest_1211 at 1316.629 kb on - strand, within Psest_1211 at 1316.629 kb on - strand, within Psest_1211 at 1316.629 kb on - strand, within Psest_1211
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,312,558 - Psest_1209 0.10 -1.5 1,312,558 - Psest_1209 0.10 -1.5 1,312,731 + Psest_1209 0.31 +1.6 1,312,731 + Psest_1209 0.31 -0.7 1,312,732 - Psest_1209 0.31 -1.4 1,312,734 + Psest_1209 0.31 -3.2 1,312,734 + Psest_1209 0.31 -1.9 1,312,735 - Psest_1209 0.31 -1.8 1,312,735 - Psest_1209 0.31 -1.4 1,312,812 + Psest_1209 0.40 +0.6 1,312,812 + Psest_1209 0.40 -1.6 1,312,812 + Psest_1209 0.40 -0.9 1,312,812 + Psest_1209 0.40 -0.4 1,312,812 + Psest_1209 0.40 -1.4 1,312,812 + Psest_1209 0.40 -0.9 1,312,812 + Psest_1209 0.40 -0.0 1,312,812 + Psest_1209 0.40 -0.1 1,312,813 - Psest_1209 0.41 +0.2 1,312,813 - Psest_1209 0.41 +1.2 1,312,813 - Psest_1209 0.41 +0.6 1,313,145 + Psest_1209 0.80 +0.8 1,313,146 - Psest_1209 0.80 -0.2 1,313,146 - Psest_1209 0.80 +0.1 1,313,146 - Psest_1209 0.80 -2.4 1,313,146 - Psest_1209 0.80 -1.9 1,313,146 - Psest_1209 0.80 +1.4 1,313,175 + Psest_1209 0.83 -1.5 1,313,176 - Psest_1209 0.83 -0.9 1,313,415 + +1.1 1,313,416 - -1.4 1,313,416 - -2.8 1,313,717 + Psest_1210 0.12 +0.9 1,313,717 + Psest_1210 0.12 -1.9 1,313,717 + Psest_1210 0.12 +1.2 1,313,718 - Psest_1210 0.12 +0.9 1,313,718 - Psest_1210 0.12 +0.4 1,313,885 + Psest_1210 0.19 +0.2 1,313,885 + Psest_1210 0.19 +1.1 1,313,885 + Psest_1210 0.19 -0.2 1,313,885 + Psest_1210 0.19 -0.7 1,313,943 - Psest_1210 0.22 -2.2 1,313,943 - Psest_1210 0.22 -3.2 1,313,943 - Psest_1210 0.22 -0.9 1,313,945 + Psest_1210 0.22 -0.5 1,313,945 + Psest_1210 0.22 +1.1 1,313,945 + Psest_1210 0.22 +0.1 1,313,945 + Psest_1210 0.22 -1.7 1,313,946 - Psest_1210 0.22 -0.9 1,313,946 - Psest_1210 0.22 +0.2 1,313,946 - Psest_1210 0.22 -1.6 1,313,946 - Psest_1210 0.22 -0.7 1,313,946 - Psest_1210 0.22 -1.5 1,313,978 + Psest_1210 0.23 +1.6 1,313,978 + Psest_1210 0.23 -0.4 1,313,978 + Psest_1210 0.23 -1.4 1,313,981 + Psest_1210 0.23 -0.8 1,313,981 + Psest_1210 0.23 -1.5 1,313,981 + Psest_1210 0.23 -0.9 1,313,981 + Psest_1210 0.23 +0.1 1,313,982 - Psest_1210 0.23 +0.1 1,313,982 - Psest_1210 0.23 -0.2 1,313,999 + Psest_1210 0.24 -1.7 1,314,035 + Psest_1210 0.26 -2.8 1,314,035 + Psest_1210 0.26 -1.4 1,314,036 - Psest_1210 0.26 -0.9 1,314,036 - Psest_1210 0.26 -0.9 1,314,068 + Psest_1210 0.27 +0.6 1,314,069 - Psest_1210 0.27 -0.4 1,314,069 - Psest_1210 0.27 -0.9 1,314,069 - Psest_1210 0.27 -0.2 1,314,324 + Psest_1210 0.38 -0.0 1,314,324 + Psest_1210 0.38 +0.9 1,314,534 + Psest_1210 0.47 -1.2 1,314,587 + Psest_1210 0.49 +0.6 1,314,587 + Psest_1210 0.49 +0.3 1,314,588 - Psest_1210 0.49 -2.7 1,314,590 + Psest_1210 0.49 +1.0 1,314,590 + Psest_1210 0.49 -1.4 1,314,590 + Psest_1210 0.49 -1.7 1,314,591 - Psest_1210 0.49 +0.3 1,314,620 + Psest_1210 0.50 +0.6 1,314,620 + Psest_1210 0.50 -2.1 1,314,623 + Psest_1210 0.50 -0.9 1,314,623 + Psest_1210 0.50 -1.3 1,314,624 - Psest_1210 0.50 -2.9 1,314,791 + Psest_1210 0.57 +0.6 1,314,791 + Psest_1210 0.57 -0.8 1,314,791 + Psest_1210 0.57 -1.5 1,314,791 + Psest_1210 0.57 +0.1 1,314,791 + Psest_1210 0.57 -2.1 1,314,791 + Psest_1210 0.57 -1.2 1,314,792 - Psest_1210 0.57 -1.3 1,314,794 + Psest_1210 0.57 -0.9 1,314,794 + Psest_1210 0.57 -0.8 1,314,794 + Psest_1210 0.57 +0.1 1,314,916 + Psest_1210 0.62 +0.4 1,314,916 + Psest_1210 0.62 -3.0 1,314,916 + Psest_1210 0.62 +0.1 1,314,916 + Psest_1210 0.62 -0.2 1,314,917 - Psest_1210 0.62 -1.7 1,314,923 + Psest_1210 0.63 -0.1 1,314,923 + Psest_1210 0.63 -0.7 1,314,933 - Psest_1210 0.63 +1.2 1,314,933 - Psest_1210 0.63 -1.8 1,314,933 - Psest_1210 0.63 +1.2 1,315,172 + Psest_1210 0.73 +0.6 1,315,173 - Psest_1210 0.73 -2.7 1,315,229 + Psest_1210 0.76 +2.0 1,315,392 - Psest_1210 0.82 -1.7 1,315,472 + Psest_1210 0.86 -0.4 1,315,472 + Psest_1210 0.86 -0.2 1,315,472 + Psest_1210 0.86 -0.1 1,315,473 - Psest_1210 0.86 +0.6 1,315,473 - Psest_1210 0.86 -0.9 1,315,583 + +0.7 1,315,643 + -1.9 1,315,643 + -1.7 1,315,643 + -0.7 1,315,643 + +0.1 1,315,643 + +0.1 1,315,643 + -0.7 1,315,643 + +0.9 1,315,643 + -1.7 1,315,643 + -0.4 1,315,643 + -0.7 1,315,643 + -0.7 1,315,643 + +1.6 1,315,643 + +2.6 1,315,643 + +0.5 1,315,643 + -0.4 1,315,644 - +1.6 1,315,644 - +3.2 1,315,644 - -0.4 1,315,644 - -0.7 1,315,644 - -2.0 1,315,644 - -0.2 1,315,644 - -0.9 1,315,644 - -2.5 1,315,644 - -1.0 1,315,644 - +0.1 1,315,644 - -1.4 1,315,644 - +0.9 1,315,647 + -0.2 1,315,647 + -1.9 1,315,647 + -1.8 1,315,647 + -1.5 1,315,647 + -1.4 1,315,647 + -2.5 1,315,648 - +0.6 1,315,648 - -1.9 1,315,648 - -2.2 1,315,685 + +0.1 1,315,685 + +0.6 1,315,685 + -0.9 1,315,685 + -2.1 1,315,685 + +0.6 1,315,686 - -1.7 1,315,686 - -2.1 1,315,686 - +0.1 1,315,686 - -2.3 1,315,686 - -1.9 1,315,686 - -2.0 1,315,742 - +0.1 1,315,801 + +0.6 1,315,801 + -2.2 1,315,802 - -0.4 1,315,810 - -2.7 1,315,810 - +1.2 1,315,815 + -1.7 1,315,815 + +1.6 1,315,815 + -2.1 1,315,815 + -1.5 1,315,815 + +0.1 1,315,815 + +0.6 1,315,815 + +0.5 1,315,816 - -0.9 1,316,119 + Psest_1211 0.21 +0.1 1,316,120 - Psest_1211 0.22 -1.8 1,316,148 + Psest_1211 0.23 -2.2 1,316,148 + Psest_1211 0.23 -1.7 1,316,149 - Psest_1211 0.24 +0.3 1,316,232 + Psest_1211 0.29 -0.7 1,316,232 + Psest_1211 0.29 -1.4 1,316,233 - Psest_1211 0.29 -0.4 1,316,233 - Psest_1211 0.29 +2.1 1,316,245 - Psest_1211 0.30 +1.1 1,316,245 - Psest_1211 0.30 -0.9 1,316,245 - Psest_1211 0.30 -0.6 1,316,448 + Psest_1211 0.44 -1.2 1,316,535 + Psest_1211 0.50 -1.5 1,316,535 + Psest_1211 0.50 +0.1 1,316,535 + Psest_1211 0.50 +1.2 1,316,535 + Psest_1211 0.50 -0.4 1,316,535 + Psest_1211 0.50 +0.1 1,316,536 - Psest_1211 0.50 -1.8 1,316,536 - Psest_1211 0.50 -0.7 1,316,536 - Psest_1211 0.50 -0.1 1,316,544 - Psest_1211 0.51 -1.4 1,316,628 + Psest_1211 0.57 -1.2 1,316,628 + Psest_1211 0.57 -1.3 1,316,628 + Psest_1211 0.57 -1.5 1,316,628 + Psest_1211 0.57 -1.5 1,316,628 + Psest_1211 0.57 +0.4 1,316,628 + Psest_1211 0.57 +0.2 1,316,628 + Psest_1211 0.57 -1.1 1,316,629 - Psest_1211 0.57 +0.1 1,316,629 - Psest_1211 0.57 -1.8 1,316,629 - Psest_1211 0.57 +0.8 1,316,629 - Psest_1211 0.57 +2.6 1,316,629 - Psest_1211 0.57 -2.9
Or see this region's nucleotide sequence