Strain Fitness in Marinobacter adhaerens HP15 around HP15_1069

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1068 and HP15_1069 are separated by 184 nucleotidesHP15_1069 and HP15_1070 are separated by 81 nucleotides HP15_1068: HP15_1068 - transporter, at 1,094,287 to 1,096,671 _1068 HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839 _1069 HP15_1070: HP15_1070 - TRAP-type uncharacterized transport system, fused permease component, at 1,097,921 to 1,100,524 _1070 Position (kb) 1096 1097 1098Strain fitness (log2 ratio) -3 -2 -1 0 1at 1095.934 kb on - strand, within HP15_1068at 1095.978 kb on + strand, within HP15_1068at 1095.978 kb on + strand, within HP15_1068at 1095.978 kb on + strand, within HP15_1068at 1096.001 kb on + strand, within HP15_1068at 1096.032 kb on + strand, within HP15_1068at 1096.098 kb on + strand, within HP15_1068at 1096.129 kb on + strand, within HP15_1068at 1096.129 kb on + strand, within HP15_1068at 1096.206 kb on - strand, within HP15_1068at 1096.251 kb on - strand, within HP15_1068at 1096.251 kb on - strand, within HP15_1068at 1096.270 kb on - strand, within HP15_1068at 1096.282 kb on - strand, within HP15_1068at 1096.316 kb on + strand, within HP15_1068at 1096.316 kb on + strand, within HP15_1068at 1096.316 kb on + strand, within HP15_1068at 1096.316 kb on + strand, within HP15_1068at 1096.450 kb on - strandat 1096.495 kb on + strandat 1096.935 kb on + strandat 1097.170 kb on + strand, within HP15_1069at 1097.170 kb on + strand, within HP15_1069at 1097.170 kb on + strand, within HP15_1069at 1097.178 kb on - strand, within HP15_1069at 1097.205 kb on - strand, within HP15_1069at 1097.228 kb on - strand, within HP15_1069at 1097.243 kb on - strand, within HP15_1069at 1097.371 kb on - strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.418 kb on - strand, within HP15_1069at 1097.434 kb on + strand, within HP15_1069at 1097.442 kb on - strand, within HP15_1069at 1097.502 kb on + strandat 1097.543 kb on - strand, within HP15_1069at 1097.660 kb on - strand, within HP15_1069at 1097.787 kb on - strandat 1097.794 kb on - strandat 1097.865 kb on + strandat 1097.946 kb on - strandat 1098.258 kb on + strand, within HP15_1070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,095,934 - HP15_1068 0.69 -0.4
1,095,978 + HP15_1068 0.71 -0.0
1,095,978 + HP15_1068 0.71 -0.4
1,095,978 + HP15_1068 0.71 +0.5
1,096,001 + HP15_1068 0.72 -1.4
1,096,032 + HP15_1068 0.73 -0.8
1,096,098 + HP15_1068 0.76 +1.0
1,096,129 + HP15_1068 0.77 -0.2
1,096,129 + HP15_1068 0.77 -0.2
1,096,206 - HP15_1068 0.80 +0.4
1,096,251 - HP15_1068 0.82 -0.9
1,096,251 - HP15_1068 0.82 +0.2
1,096,270 - HP15_1068 0.83 -0.9
1,096,282 - HP15_1068 0.84 +0.5
1,096,316 + HP15_1068 0.85 +0.5
1,096,316 + HP15_1068 0.85 +1.1
1,096,316 + HP15_1068 0.85 -0.9
1,096,316 + HP15_1068 0.85 +0.0
1,096,450 - +0.1
1,096,495 + -0.4
1,096,935 + -2.2
1,097,170 + HP15_1069 0.32 -2.4
1,097,170 + HP15_1069 0.32 -2.2
1,097,170 + HP15_1069 0.32 -2.6
1,097,178 - HP15_1069 0.33 -2.8
1,097,205 - HP15_1069 0.35 -3.4
1,097,228 - HP15_1069 0.38 -2.4
1,097,243 - HP15_1069 0.39 -3.5
1,097,371 - HP15_1069 0.52 -3.5
1,097,410 + HP15_1069 0.56 -2.4
1,097,410 + HP15_1069 0.56 -2.7
1,097,410 + HP15_1069 0.56 -2.5
1,097,418 - HP15_1069 0.57 -1.7
1,097,434 + HP15_1069 0.59 -1.5
1,097,442 - HP15_1069 0.60 -1.4
1,097,502 + -0.9
1,097,543 - HP15_1069 0.70 -3.0
1,097,660 - HP15_1069 0.82 -2.6
1,097,787 - -1.4
1,097,794 - -2.9
1,097,865 + -0.3
1,097,946 - +0.6
1,098,258 + HP15_1070 0.13 -1.2

Or see this region's nucleotide sequence