Strain Fitness in Marinobacter adhaerens HP15 around HP15_1046

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1047 and HP15_1046 are separated by 81 nucleotidesHP15_1046 and HP15_1048 are separated by 164 nucleotides HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034 _1047 HP15_1046: HP15_1046 - competence damage-inducible protein A, at 1,069,116 to 1,069,616 _1046 HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827 _1048 Position (kb) 1069 1070Strain fitness (log2 ratio) -2 -1 0 1at 1068.144 kb on + strand, within HP15_1047at 1068.162 kb on + strand, within HP15_1047at 1068.164 kb on - strand, within HP15_1047at 1068.164 kb on - strand, within HP15_1047at 1068.248 kb on + strand, within HP15_1047at 1068.248 kb on + strand, within HP15_1047at 1068.606 kb on - strand, within HP15_1047at 1068.608 kb on + strand, within HP15_1047at 1068.616 kb on - strand, within HP15_1047at 1068.723 kb on - strand, within HP15_1047at 1068.793 kb on + strandat 1068.877 kb on - strandat 1068.877 kb on - strandat 1068.897 kb on + strandat 1068.907 kb on + strandat 1068.915 kb on - strandat 1069.038 kb on - strandat 1069.118 kb on + strandat 1069.394 kb on + strand, within HP15_1046at 1069.432 kb on - strand, within HP15_1046at 1069.488 kb on + strand, within HP15_1046at 1070.115 kb on + strand, within HP15_1048

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,068,144 + HP15_1047 0.66 +1.1
1,068,162 + HP15_1047 0.67 +0.5
1,068,164 - HP15_1047 0.67 +1.6
1,068,164 - HP15_1047 0.67 +0.5
1,068,248 + HP15_1047 0.70 +0.2
1,068,248 + HP15_1047 0.70 +0.1
1,068,606 - HP15_1047 0.84 -0.2
1,068,608 + HP15_1047 0.84 -0.4
1,068,616 - HP15_1047 0.84 -0.3
1,068,723 - HP15_1047 0.88 -1.0
1,068,793 + +1.7
1,068,877 - -0.0
1,068,877 - -0.5
1,068,897 + +0.2
1,068,907 + +0.3
1,068,915 - +0.7
1,069,038 - -0.6
1,069,118 + +0.6
1,069,394 + HP15_1046 0.55 -0.5
1,069,432 - HP15_1046 0.63 -1.0
1,069,488 + HP15_1046 0.74 -0.3
1,070,115 + HP15_1048 0.32 -2.4

Or see this region's nucleotide sequence