Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3480 and Dsui_3481 are separated by 165 nucleotides Dsui_3481 and Dsui_3482 are separated by 91 nucleotides
Dsui_3480: Dsui_3480 - arabinose efflux permease family protein, at 3,743,297 to 3,744,646
_3480
Dsui_3481: Dsui_3481 - aspartate ammonia-lyase, at 3,744,812 to 3,746,230
_3481
Dsui_3482: Dsui_3482 - Na+/H+ dicarboxylate symporter, at 3,746,322 to 3,747,635
_3482
Position (kb)
3744
3745
3746
3747 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3744.576 kb on - strand at 3744.581 kb on - strand at 3744.606 kb on - strand at 3744.609 kb on - strand at 3744.791 kb on - strand at 3744.799 kb on - strand at 3744.804 kb on - strand at 3744.866 kb on + strand at 3744.885 kb on + strand at 3744.893 kb on - strand at 3744.893 kb on - strand at 3744.942 kb on + strand at 3744.942 kb on + strand at 3744.950 kb on - strand at 3744.950 kb on - strand at 3744.950 kb on - strand at 3744.952 kb on + strand at 3744.955 kb on - strand, within Dsui_3481 at 3745.187 kb on + strand, within Dsui_3481 at 3745.188 kb on - strand, within Dsui_3481 at 3745.191 kb on + strand, within Dsui_3481 at 3745.209 kb on - strand, within Dsui_3481 at 3745.247 kb on - strand, within Dsui_3481 at 3745.321 kb on - strand, within Dsui_3481 at 3745.346 kb on - strand at 3745.348 kb on + strand, within Dsui_3481 at 3745.348 kb on + strand, within Dsui_3481 at 3745.394 kb on + strand, within Dsui_3481 at 3745.428 kb on + strand, within Dsui_3481 at 3745.542 kb on + strand, within Dsui_3481 at 3745.555 kb on - strand, within Dsui_3481 at 3745.607 kb on - strand, within Dsui_3481 at 3745.627 kb on - strand, within Dsui_3481 at 3745.635 kb on + strand, within Dsui_3481 at 3745.681 kb on + strand, within Dsui_3481 at 3745.713 kb on + strand, within Dsui_3481 at 3745.721 kb on - strand, within Dsui_3481 at 3745.827 kb on + strand, within Dsui_3481 at 3745.882 kb on + strand, within Dsui_3481 at 3745.914 kb on + strand, within Dsui_3481 at 3745.932 kb on - strand, within Dsui_3481 at 3745.956 kb on + strand, within Dsui_3481 at 3746.056 kb on + strand, within Dsui_3481 at 3746.491 kb on + strand, within Dsui_3482 at 3746.501 kb on - strand, within Dsui_3482 at 3746.694 kb on - strand, within Dsui_3482 at 3746.721 kb on - strand, within Dsui_3482 at 3746.721 kb on - strand, within Dsui_3482 at 3746.867 kb on + strand, within Dsui_3482 at 3747.015 kb on - strand, within Dsui_3482
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,744,576 - +2.0 3,744,581 - -1.0 3,744,606 - +2.0 3,744,609 - +1.0 3,744,791 - -1.3 3,744,799 - -0.4 3,744,804 - -0.8 3,744,866 + -1.2 3,744,885 + -0.7 3,744,893 - -1.3 3,744,893 - -0.9 3,744,942 + -0.9 3,744,942 + -0.9 3,744,950 - -2.0 3,744,950 - -2.7 3,744,950 - -2.3 3,744,952 + -1.1 3,744,955 - Dsui_3481 0.10 -1.7 3,745,187 + Dsui_3481 0.26 -0.5 3,745,188 - Dsui_3481 0.26 -1.6 3,745,191 + Dsui_3481 0.27 -0.8 3,745,209 - Dsui_3481 0.28 -2.2 3,745,247 - Dsui_3481 0.31 -0.6 3,745,321 - Dsui_3481 0.36 -0.5 3,745,346 - +1.0 3,745,348 + Dsui_3481 0.38 -2.7 3,745,348 + Dsui_3481 0.38 -0.6 3,745,394 + Dsui_3481 0.41 -0.8 3,745,428 + Dsui_3481 0.43 -1.0 3,745,542 + Dsui_3481 0.51 -0.9 3,745,555 - Dsui_3481 0.52 -0.7 3,745,607 - Dsui_3481 0.56 -1.3 3,745,627 - Dsui_3481 0.57 -1.0 3,745,635 + Dsui_3481 0.58 -0.8 3,745,681 + Dsui_3481 0.61 -1.1 3,745,713 + Dsui_3481 0.63 -1.0 3,745,721 - Dsui_3481 0.64 -0.2 3,745,827 + Dsui_3481 0.72 -1.0 3,745,882 + Dsui_3481 0.75 -0.3 3,745,914 + Dsui_3481 0.78 -1.2 3,745,932 - Dsui_3481 0.79 -0.8 3,745,956 + Dsui_3481 0.81 -0.1 3,746,056 + Dsui_3481 0.88 -1.3 3,746,491 + Dsui_3482 0.13 -1.7 3,746,501 - Dsui_3482 0.14 -0.4 3,746,694 - Dsui_3482 0.28 -1.7 3,746,721 - Dsui_3482 0.30 -1.1 3,746,721 - Dsui_3482 0.30 -0.9 3,746,867 + Dsui_3482 0.41 -0.4 3,747,015 - Dsui_3482 0.53 -1.5
Or see this region's nucleotide sequence