Strain Fitness in Dechlorosoma suillum PS around Dsui_3387

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3385 and Dsui_3386 are separated by 196 nucleotidesDsui_3386 and Dsui_3387 overlap by 4 nucleotidesDsui_3387 and Dsui_3388 are separated by 222 nucleotides Dsui_3385: Dsui_3385 - Protein of unknown function (DUF1504), at 3,628,279 to 3,629,547 _3385 Dsui_3386: Dsui_3386 - response regulator, at 3,629,744 to 3,630,403 _3386 Dsui_3387: Dsui_3387 - histidine kinase,histidine kinase,MASE1-containing protein, at 3,630,400 to 3,632,037 _3387 Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627 _3388 Position (kb) 3630 3631 3632 3633Strain fitness (log2 ratio) -2 -1 0 1at 3629.553 kb on - strandat 3632.073 kb on - strandat 3632.164 kb on + strandat 3632.164 kb on + strandat 3632.169 kb on + strandat 3632.177 kb on - strandat 3632.266 kb on - strandat 3632.432 kb on + strand, within Dsui_3388at 3632.482 kb on + strand, within Dsui_3388at 3632.518 kb on + strand, within Dsui_3388at 3632.521 kb on - strand, within Dsui_3388at 3632.521 kb on - strand, within Dsui_3388at 3632.545 kb on - strand, within Dsui_3388at 3632.586 kb on - strand, within Dsui_3388at 3632.612 kb on - strand, within Dsui_3388at 3632.686 kb on + strand, within Dsui_3388at 3632.726 kb on + strand, within Dsui_3388at 3632.817 kb on + strand, within Dsui_3388at 3632.845 kb on + strand, within Dsui_3388at 3632.853 kb on - strand, within Dsui_3388at 3632.927 kb on + strand, within Dsui_3388at 3632.937 kb on + strand, within Dsui_3388at 3633.010 kb on - strand, within Dsui_3388

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,629,553 - -0.6
3,632,073 - -0.5
3,632,164 + +1.0
3,632,164 + +0.7
3,632,169 + -0.9
3,632,177 - -2.1
3,632,266 - -0.0
3,632,432 + Dsui_3388 0.13 -1.2
3,632,482 + Dsui_3388 0.16 -0.8
3,632,518 + Dsui_3388 0.19 -0.4
3,632,521 - Dsui_3388 0.19 -0.0
3,632,521 - Dsui_3388 0.19 -1.5
3,632,545 - Dsui_3388 0.21 -0.4
3,632,586 - Dsui_3388 0.24 +0.2
3,632,612 - Dsui_3388 0.26 -2.2
3,632,686 + Dsui_3388 0.31 +0.2
3,632,726 + Dsui_3388 0.34 -0.3
3,632,817 + Dsui_3388 0.41 +0.3
3,632,845 + Dsui_3388 0.43 -0.8
3,632,853 - Dsui_3388 0.43 -1.1
3,632,927 + Dsui_3388 0.49 -0.7
3,632,937 + Dsui_3388 0.49 -0.6
3,633,010 - Dsui_3388 0.55 -0.4

Or see this region's nucleotide sequence