Strain Fitness in Dechlorosoma suillum PS around Dsui_3297

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3296 and Dsui_3297 are separated by 84 nucleotidesDsui_3297 and Dsui_3298 are separated by 122 nucleotides Dsui_3296: Dsui_3296 - isocitrate dehydrogenase, NADP-dependent, prokaryotic type, at 3,538,082 to 3,539,308 _3296 Dsui_3297: Dsui_3297 - nitroreductase, at 3,539,393 to 3,540,046 _3297 Dsui_3298: Dsui_3298 - Kef-type K+ transport system, predicted NAD-binding component, at 3,540,169 to 3,541,869 _3298 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1at 3538.410 kb on + strand, within Dsui_3296at 3538.418 kb on - strand, within Dsui_3296at 3538.471 kb on + strand, within Dsui_3296at 3538.479 kb on - strand, within Dsui_3296at 3538.499 kb on - strand, within Dsui_3296at 3538.500 kb on + strand, within Dsui_3296at 3538.500 kb on + strand, within Dsui_3296at 3538.508 kb on - strand, within Dsui_3296at 3538.518 kb on - strand, within Dsui_3296at 3538.541 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.575 kb on + strand, within Dsui_3296at 3538.583 kb on - strand, within Dsui_3296at 3538.583 kb on - strand, within Dsui_3296at 3538.587 kb on + strand, within Dsui_3296at 3538.714 kb on + strand, within Dsui_3296at 3538.805 kb on + strand, within Dsui_3296at 3538.813 kb on - strand, within Dsui_3296at 3538.816 kb on + strand, within Dsui_3296at 3538.838 kb on + strand, within Dsui_3296at 3538.843 kb on + strand, within Dsui_3296at 3538.941 kb on + strand, within Dsui_3296at 3538.974 kb on - strand, within Dsui_3296at 3539.005 kb on + strand, within Dsui_3296at 3539.048 kb on - strand, within Dsui_3296at 3539.048 kb on - strand, within Dsui_3296at 3539.048 kb on - strandat 3539.101 kb on + strand, within Dsui_3296at 3539.101 kb on + strand, within Dsui_3296at 3539.226 kb on - strandat 3539.266 kb on + strandat 3539.266 kb on + strandat 3539.302 kb on + strandat 3539.310 kb on - strandat 3539.476 kb on + strand, within Dsui_3297at 3539.543 kb on + strand, within Dsui_3297at 3539.543 kb on + strand, within Dsui_3297at 3539.621 kb on - strand, within Dsui_3297at 3539.703 kb on + strand, within Dsui_3297at 3539.773 kb on + strand, within Dsui_3297at 3539.806 kb on + strandat 3539.824 kb on + strand, within Dsui_3297at 3539.832 kb on - strand, within Dsui_3297at 3539.873 kb on + strand, within Dsui_3297at 3539.873 kb on + strand, within Dsui_3297at 3539.950 kb on - strand, within Dsui_3297at 3540.012 kb on + strandat 3540.020 kb on - strandat 3540.020 kb on - strandat 3540.100 kb on + strandat 3540.175 kb on + strandat 3540.220 kb on - strandat 3540.233 kb on + strandat 3540.283 kb on - strandat 3540.300 kb on + strandat 3540.347 kb on - strand, within Dsui_3298at 3540.354 kb on + strand, within Dsui_3298at 3540.547 kb on - strand, within Dsui_3298at 3540.576 kb on - strand, within Dsui_3298at 3540.580 kb on - strand, within Dsui_3298at 3540.660 kb on + strand, within Dsui_3298at 3540.665 kb on + strand, within Dsui_3298at 3540.677 kb on - strand, within Dsui_3298at 3540.775 kb on - strand, within Dsui_3298at 3540.800 kb on - strand, within Dsui_3298at 3540.837 kb on + strand, within Dsui_3298at 3540.845 kb on - strand, within Dsui_3298at 3541.003 kb on + strand, within Dsui_3298at 3541.016 kb on - strand, within Dsui_3298

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,538,410 + Dsui_3296 0.27 -1.7
3,538,418 - Dsui_3296 0.27 -0.9
3,538,471 + Dsui_3296 0.32 -1.2
3,538,479 - Dsui_3296 0.32 -0.2
3,538,499 - Dsui_3296 0.34 -1.2
3,538,500 + Dsui_3296 0.34 -1.0
3,538,500 + Dsui_3296 0.34 -0.7
3,538,508 - Dsui_3296 0.35 -0.8
3,538,518 - Dsui_3296 0.36 -0.6
3,538,541 + Dsui_3296 0.37 -1.3
3,538,575 + Dsui_3296 0.40 -0.8
3,538,575 + Dsui_3296 0.40 -1.3
3,538,575 + Dsui_3296 0.40 -1.5
3,538,575 + Dsui_3296 0.40 -0.3
3,538,583 - Dsui_3296 0.41 -0.8
3,538,583 - Dsui_3296 0.41 -1.0
3,538,587 + Dsui_3296 0.41 +0.4
3,538,714 + Dsui_3296 0.52 -0.7
3,538,805 + Dsui_3296 0.59 -0.7
3,538,813 - Dsui_3296 0.60 -0.7
3,538,816 + Dsui_3296 0.60 -1.1
3,538,838 + Dsui_3296 0.62 -2.1
3,538,843 + Dsui_3296 0.62 -0.4
3,538,941 + Dsui_3296 0.70 -0.7
3,538,974 - Dsui_3296 0.73 -1.9
3,539,005 + Dsui_3296 0.75 -1.3
3,539,048 - Dsui_3296 0.79 -0.7
3,539,048 - Dsui_3296 0.79 -0.4
3,539,048 - -0.1
3,539,101 + Dsui_3296 0.83 -1.1
3,539,101 + Dsui_3296 0.83 -1.3
3,539,226 - -0.8
3,539,266 + -1.2
3,539,266 + -0.9
3,539,302 + -1.5
3,539,310 - -0.7
3,539,476 + Dsui_3297 0.13 -1.1
3,539,543 + Dsui_3297 0.23 -1.1
3,539,543 + Dsui_3297 0.23 -2.0
3,539,621 - Dsui_3297 0.35 -1.4
3,539,703 + Dsui_3297 0.47 -0.5
3,539,773 + Dsui_3297 0.58 -0.4
3,539,806 + -0.1
3,539,824 + Dsui_3297 0.66 -1.5
3,539,832 - Dsui_3297 0.67 -1.1
3,539,873 + Dsui_3297 0.73 -0.6
3,539,873 + Dsui_3297 0.73 -1.1
3,539,950 - Dsui_3297 0.85 -0.6
3,540,012 + -0.7
3,540,020 - -0.4
3,540,020 - +0.0
3,540,100 + -0.5
3,540,175 + -1.2
3,540,220 - -1.2
3,540,233 + +1.0
3,540,283 - -1.0
3,540,300 + -0.5
3,540,347 - Dsui_3298 0.10 -1.0
3,540,354 + Dsui_3298 0.11 -2.2
3,540,547 - Dsui_3298 0.22 -1.1
3,540,576 - Dsui_3298 0.24 -1.0
3,540,580 - Dsui_3298 0.24 -1.0
3,540,660 + Dsui_3298 0.29 -1.3
3,540,665 + Dsui_3298 0.29 -1.1
3,540,677 - Dsui_3298 0.30 -1.2
3,540,775 - Dsui_3298 0.36 -0.3
3,540,800 - Dsui_3298 0.37 -1.3
3,540,837 + Dsui_3298 0.39 -1.1
3,540,845 - Dsui_3298 0.40 -0.8
3,541,003 + Dsui_3298 0.49 -2.5
3,541,016 - Dsui_3298 0.50 -0.8

Or see this region's nucleotide sequence