Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3159 and Dsui_3160 are separated by 3 nucleotides Dsui_3160 and Dsui_3161 are separated by 11 nucleotides Dsui_3161 and Dsui_3162 are separated by 311 nucleotides
Dsui_3159: Dsui_3159 - PAS domain S-box, at 3,383,458 to 3,385,446
_3159
Dsui_3160: Dsui_3160 - response regulator, at 3,385,450 to 3,386,052
_3160
Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986
_3161
Dsui_3162: Dsui_3162 - TonB-dependent siderophore receptor, at 3,388,298 to 3,390,421
_3162
Position (kb)
3386
3387
3388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3385.081 kb on + strand, within Dsui_3159 at 3385.095 kb on + strand, within Dsui_3159 at 3385.181 kb on + strand, within Dsui_3159 at 3385.234 kb on + strand, within Dsui_3159 at 3385.247 kb on - strand, within Dsui_3159 at 3385.330 kb on - strand at 3385.330 kb on - strand at 3385.377 kb on + strand at 3385.440 kb on + strand at 3385.567 kb on - strand, within Dsui_3160 at 3385.608 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.673 kb on - strand, within Dsui_3160 at 3385.680 kb on - strand, within Dsui_3160 at 3385.716 kb on + strand, within Dsui_3160 at 3385.768 kb on + strand, within Dsui_3160 at 3385.883 kb on + strand, within Dsui_3160 at 3385.993 kb on - strand at 3386.032 kb on + strand at 3386.054 kb on - strand at 3386.131 kb on + strand at 3386.204 kb on - strand at 3386.234 kb on - strand at 3386.261 kb on + strand, within Dsui_3161 at 3386.445 kb on - strand, within Dsui_3161 at 3386.453 kb on + strand, within Dsui_3161 at 3386.536 kb on + strand, within Dsui_3161 at 3386.680 kb on - strand at 3386.777 kb on - strand, within Dsui_3161 at 3386.830 kb on + strand, within Dsui_3161 at 3387.063 kb on + strand, within Dsui_3161 at 3387.214 kb on - strand at 3387.302 kb on + strand, within Dsui_3161 at 3387.605 kb on + strand, within Dsui_3161 at 3387.673 kb on + strand, within Dsui_3161 at 3387.719 kb on + strand, within Dsui_3161 at 3387.918 kb on + strand at 3387.988 kb on - strand at 3388.269 kb on + strand at 3388.316 kb on - strand at 3388.345 kb on + strand at 3388.358 kb on - strand at 3388.382 kb on + strand at 3388.390 kb on - strand at 3388.402 kb on - strand at 3388.432 kb on - strand at 3388.432 kb on - strand at 3388.433 kb on - strand at 3388.553 kb on + strand, within Dsui_3162 at 3388.627 kb on - strand at 3388.700 kb on + strand, within Dsui_3162 at 3388.700 kb on + strand, within Dsui_3162 at 3388.751 kb on - strand, within Dsui_3162 at 3388.808 kb on + strand, within Dsui_3162 at 3388.813 kb on + strand, within Dsui_3162 at 3388.922 kb on - strand, within Dsui_3162 at 3388.955 kb on + strand, within Dsui_3162 at 3388.963 kb on - strand, within Dsui_3162
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,385,081 + Dsui_3159 0.82 -0.0 3,385,095 + Dsui_3159 0.82 -0.7 3,385,181 + Dsui_3159 0.87 -0.3 3,385,234 + Dsui_3159 0.89 +0.0 3,385,247 - Dsui_3159 0.90 -0.3 3,385,330 - +0.1 3,385,330 - +0.2 3,385,377 + -0.2 3,385,440 + -0.8 3,385,567 - Dsui_3160 0.19 +0.2 3,385,608 + Dsui_3160 0.26 -0.1 3,385,640 + Dsui_3160 0.32 -0.7 3,385,640 + Dsui_3160 0.32 -0.4 3,385,648 - Dsui_3160 0.33 -0.1 3,385,648 - Dsui_3160 0.33 +0.4 3,385,648 - Dsui_3160 0.33 -2.2 3,385,648 - Dsui_3160 0.33 +0.2 3,385,673 - Dsui_3160 0.37 +0.6 3,385,680 - Dsui_3160 0.38 +0.4 3,385,716 + Dsui_3160 0.44 +0.0 3,385,768 + Dsui_3160 0.53 -0.7 3,385,883 + Dsui_3160 0.72 -0.3 3,385,993 - -0.1 3,386,032 + -0.8 3,386,054 - +2.0 3,386,131 + -1.3 3,386,204 - +0.0 3,386,234 - -0.3 3,386,261 + Dsui_3161 0.10 -1.2 3,386,445 - Dsui_3161 0.20 -0.6 3,386,453 + Dsui_3161 0.20 -3.2 3,386,536 + Dsui_3161 0.25 -1.0 3,386,680 - -0.0 3,386,777 - Dsui_3161 0.37 -0.2 3,386,830 + Dsui_3161 0.40 -1.9 3,387,063 + Dsui_3161 0.52 -1.3 3,387,214 - +0.2 3,387,302 + Dsui_3161 0.64 -2.2 3,387,605 + Dsui_3161 0.80 -1.2 3,387,673 + Dsui_3161 0.84 -0.5 3,387,719 + Dsui_3161 0.86 -1.6 3,387,918 + -0.8 3,387,988 - -3.2 3,388,269 + +0.0 3,388,316 - -0.0 3,388,345 + -1.3 3,388,358 - -1.4 3,388,382 + -0.8 3,388,390 - -0.2 3,388,402 - -0.6 3,388,432 - -0.0 3,388,432 - -1.0 3,388,433 - -1.4 3,388,553 + Dsui_3162 0.12 -0.7 3,388,627 - +0.4 3,388,700 + Dsui_3162 0.19 -0.0 3,388,700 + Dsui_3162 0.19 -0.4 3,388,751 - Dsui_3162 0.21 -2.3 3,388,808 + Dsui_3162 0.24 -0.5 3,388,813 + Dsui_3162 0.24 -1.5 3,388,922 - Dsui_3162 0.29 +1.2 3,388,955 + Dsui_3162 0.31 -1.6 3,388,963 - Dsui_3162 0.31 -1.8
Or see this region's nucleotide sequence