Strain Fitness in Dechlorosoma suillum PS around Dsui_3083

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3082 and Dsui_3083 are separated by 140 nucleotidesDsui_3083 and Dsui_3084 are separated by 98 nucleotides Dsui_3082: Dsui_3082 - chaperone protein DnaJ, at 3,299,528 to 3,300,667 _3082 Dsui_3083: Dsui_3083 - ABC-type branched-chain amino acid transport system, periplasmic component, at 3,300,808 to 3,301,953 _3083 Dsui_3084: Dsui_3084 - cysteinyl-tRNA synthetase, at 3,302,052 to 3,303,482 _3084 Position (kb) 3300 3301 3302Strain fitness (log2 ratio) -3 -2 -1 0 1at 3300.492 kb on + strand, within Dsui_3082at 3300.580 kb on + strandat 3300.633 kb on + strandat 3300.757 kb on - strandat 3300.780 kb on + strandat 3300.859 kb on + strandat 3300.936 kb on - strand, within Dsui_3083at 3300.994 kb on - strandat 3301.128 kb on - strand, within Dsui_3083at 3301.188 kb on - strand, within Dsui_3083at 3301.328 kb on + strand, within Dsui_3083at 3301.328 kb on + strand, within Dsui_3083at 3301.444 kb on - strand, within Dsui_3083at 3301.451 kb on + strand, within Dsui_3083at 3301.454 kb on - strand, within Dsui_3083at 3301.481 kb on - strand, within Dsui_3083at 3301.493 kb on - strand, within Dsui_3083at 3301.502 kb on + strand, within Dsui_3083at 3301.557 kb on + strand, within Dsui_3083at 3301.606 kb on + strand, within Dsui_3083at 3301.644 kb on + strand, within Dsui_3083at 3301.645 kb on + strand, within Dsui_3083at 3301.675 kb on - strand, within Dsui_3083at 3301.740 kb on - strand, within Dsui_3083at 3301.749 kb on + strand, within Dsui_3083at 3301.830 kb on + strand, within Dsui_3083at 3301.855 kb on - strandat 3301.855 kb on - strandat 3301.878 kb on + strandat 3301.942 kb on + strandat 3301.947 kb on + strandat 3302.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,300,492 + Dsui_3082 0.85 +1.2
3,300,580 + +0.9
3,300,633 + +0.3
3,300,757 - -0.7
3,300,780 + +0.1
3,300,859 + +0.1
3,300,936 - Dsui_3083 0.11 -1.2
3,300,994 - +0.4
3,301,128 - Dsui_3083 0.28 -0.0
3,301,188 - Dsui_3083 0.33 +0.0
3,301,328 + Dsui_3083 0.45 -0.2
3,301,328 + Dsui_3083 0.45 -0.0
3,301,444 - Dsui_3083 0.55 -0.8
3,301,451 + Dsui_3083 0.56 +0.1
3,301,454 - Dsui_3083 0.56 -1.6
3,301,481 - Dsui_3083 0.59 -0.7
3,301,493 - Dsui_3083 0.60 +0.3
3,301,502 + Dsui_3083 0.61 +0.2
3,301,557 + Dsui_3083 0.65 -0.2
3,301,606 + Dsui_3083 0.70 +1.4
3,301,644 + Dsui_3083 0.73 -0.2
3,301,645 + Dsui_3083 0.73 -0.3
3,301,675 - Dsui_3083 0.76 -1.2
3,301,740 - Dsui_3083 0.81 -2.4
3,301,749 + Dsui_3083 0.82 -0.9
3,301,830 + Dsui_3083 0.89 -0.1
3,301,855 - -1.1
3,301,855 - -0.6
3,301,878 + +0.0
3,301,942 + +0.2
3,301,947 + -2.9
3,302,052 - +0.8

Or see this region's nucleotide sequence