Strain Fitness in Dechlorosoma suillum PS around Dsui_3069

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3067 and Dsui_3068 are separated by 94 nucleotidesDsui_3068 and Dsui_3069 are separated by 52 nucleotidesDsui_3069 and Dsui_3070 are separated by 58 nucleotidesDsui_3070 and Dsui_3071 overlap by 70 nucleotides Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159 _3067 Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724 _3068 Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343 _3069 Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253 _3070 Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972 _3071 Position (kb) 3284 3285 3286Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3284.245 kb on + strandat 3284.707 kb on - strandat 3284.753 kb on + strandat 3284.793 kb on + strandat 3284.793 kb on + strandat 3284.796 kb on + strandat 3284.833 kb on + strandat 3284.834 kb on + strand, within Dsui_3069at 3284.855 kb on - strandat 3284.869 kb on + strand, within Dsui_3069at 3284.919 kb on + strand, within Dsui_3069at 3284.927 kb on - strandat 3284.963 kb on - strandat 3285.202 kb on + strand, within Dsui_3069at 3285.228 kb on - strandat 3285.263 kb on + strand, within Dsui_3069at 3285.323 kb on - strandat 3285.390 kb on - strandat 3285.425 kb on + strandat 3285.454 kb on - strandat 3285.521 kb on - strand, within Dsui_3070at 3285.528 kb on + strand, within Dsui_3070at 3285.583 kb on - strand, within Dsui_3070at 3285.601 kb on + strand, within Dsui_3070at 3285.672 kb on + strand, within Dsui_3070at 3285.711 kb on - strand, within Dsui_3070at 3285.769 kb on + strand, within Dsui_3070at 3285.771 kb on - strand, within Dsui_3070at 3285.777 kb on - strand, within Dsui_3070at 3285.777 kb on - strand, within Dsui_3070at 3285.782 kb on - strand, within Dsui_3070at 3285.883 kb on + strand, within Dsui_3070at 3285.890 kb on - strand, within Dsui_3070at 3285.999 kb on + strand, within Dsui_3070at 3286.006 kb on - strand, within Dsui_3070at 3286.342 kb on + strand, within Dsui_3071

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,284,245 + -0.4
3,284,707 - -0.9
3,284,753 + +1.7
3,284,793 + -2.9
3,284,793 + -0.8
3,284,796 + -0.4
3,284,833 + -1.8
3,284,834 + Dsui_3069 0.10 -1.0
3,284,855 - +2.0
3,284,869 + Dsui_3069 0.16 -2.0
3,284,919 + Dsui_3069 0.25 +0.1
3,284,927 - +0.4
3,284,963 - +1.0
3,285,202 + Dsui_3069 0.75 -1.4
3,285,228 - +2.0
3,285,263 + Dsui_3069 0.86 -0.6
3,285,323 - -0.0
3,285,390 - -0.5
3,285,425 + +0.2
3,285,454 - -0.5
3,285,521 - Dsui_3070 0.14 -0.0
3,285,528 + Dsui_3070 0.15 +1.3
3,285,583 - Dsui_3070 0.21 +0.8
3,285,601 + Dsui_3070 0.23 +0.2
3,285,672 + Dsui_3070 0.32 -0.7
3,285,711 - Dsui_3070 0.36 -1.2
3,285,769 + Dsui_3070 0.43 -0.6
3,285,771 - Dsui_3070 0.43 -0.2
3,285,777 - Dsui_3070 0.44 +0.3
3,285,777 - Dsui_3070 0.44 -0.0
3,285,782 - Dsui_3070 0.45 -0.9
3,285,883 + Dsui_3070 0.56 -0.2
3,285,890 - Dsui_3070 0.57 +0.4
3,285,999 + Dsui_3070 0.70 +0.3
3,286,006 - Dsui_3070 0.71 -0.9
3,286,342 + Dsui_3071 0.20 -1.1

Or see this region's nucleotide sequence