Strain Fitness in Dechlorosoma suillum PS around Dsui_3011

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3010 and Dsui_3011 are separated by 13 nucleotidesDsui_3011 and Dsui_3012 are separated by 2 nucleotides Dsui_3010: Dsui_3010 - polysulfide reductase, at 3,223,624 to 3,224,781 _3010 Dsui_3011: Dsui_3011 - Fe-S-cluster-containing hydrogenase subunit, at 3,224,795 to 3,225,769 _3011 Dsui_3012: Dsui_3012 - hydrogenase (NiFe) small subunit HydA, at 3,225,772 to 3,226,953 _3012 Position (kb) 3224 3225 3226Strain fitness (log2 ratio) -1 0 1 2at 3223.821 kb on + strandat 3223.951 kb on + strand, within Dsui_3010at 3224.158 kb on - strand, within Dsui_3010at 3224.242 kb on - strand, within Dsui_3010at 3224.293 kb on - strandat 3224.442 kb on + strand, within Dsui_3010at 3224.469 kb on + strand, within Dsui_3010at 3224.621 kb on - strandat 3224.792 kb on + strandat 3224.879 kb on + strandat 3225.009 kb on + strandat 3225.467 kb on - strand, within Dsui_3011at 3225.499 kb on + strandat 3225.506 kb on + strand, within Dsui_3011at 3225.542 kb on - strandat 3225.557 kb on - strandat 3225.929 kb on + strand, within Dsui_3012at 3226.231 kb on + strandat 3226.270 kb on + strandat 3226.333 kb on + strandat 3226.354 kb on + strand, within Dsui_3012at 3226.432 kb on - strandat 3226.557 kb on + strandat 3226.565 kb on + strand, within Dsui_3012

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,223,821 + -0.6
3,223,951 + Dsui_3010 0.28 +0.2
3,224,158 - Dsui_3010 0.46 -1.4
3,224,242 - Dsui_3010 0.53 -1.0
3,224,293 - +2.0
3,224,442 + Dsui_3010 0.71 +1.4
3,224,469 + Dsui_3010 0.73 -0.6
3,224,621 - +1.4
3,224,792 + +1.0
3,224,879 + -0.4
3,225,009 + -0.0
3,225,467 - Dsui_3011 0.69 -0.7
3,225,499 + +2.0
3,225,506 + Dsui_3011 0.73 -1.4
3,225,542 - -0.4
3,225,557 - +0.4
3,225,929 + Dsui_3012 0.13 -0.2
3,226,231 + -0.0
3,226,270 + -0.4
3,226,333 + +0.4
3,226,354 + Dsui_3012 0.49 +0.5
3,226,432 - +2.0
3,226,557 + +0.4
3,226,565 + Dsui_3012 0.67 -0.0

Or see this region's nucleotide sequence