Strain Fitness in Dechlorosoma suillum PS around Dsui_2890

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2888 and Dsui_2889 are separated by 42 nucleotidesDsui_2889 and Dsui_2890 are separated by 53 nucleotidesDsui_2890 and Dsui_2891 are separated by 21 nucleotidesDsui_2891 and Dsui_2892 are separated by 86 nucleotides Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278 _2888 Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121 _2889 Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103 _2890 Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532 _2891 Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596 _2892 Position (kb) 3086 3087 3088 3089Strain fitness (log2 ratio) -2 -1 0 1at 3085.269 kb on - strandat 3085.305 kb on + strandat 3085.373 kb on - strandat 3085.478 kb on + strand, within Dsui_2889at 3085.630 kb on + strand, within Dsui_2889at 3085.718 kb on - strand, within Dsui_2889at 3085.745 kb on - strandat 3085.826 kb on + strand, within Dsui_2889at 3085.870 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.034 kb on + strand, within Dsui_2889at 3086.357 kb on + strandat 3086.365 kb on - strandat 3086.404 kb on + strandat 3086.468 kb on - strand, within Dsui_2890at 3086.640 kb on + strand, within Dsui_2890at 3086.648 kb on - strand, within Dsui_2890at 3086.659 kb on + strand, within Dsui_2890at 3086.748 kb on - strand, within Dsui_2890at 3086.770 kb on - strand, within Dsui_2890at 3086.808 kb on - strandat 3086.823 kb on + strand, within Dsui_2890at 3086.826 kb on - strand, within Dsui_2890at 3086.857 kb on + strand, within Dsui_2890at 3086.890 kb on + strand, within Dsui_2890at 3087.017 kb on - strand, within Dsui_2890at 3087.166 kb on - strand, within Dsui_2890at 3087.225 kb on - strand, within Dsui_2890at 3087.490 kb on + strand, within Dsui_2890at 3087.498 kb on - strand, within Dsui_2890at 3087.714 kb on - strand, within Dsui_2890at 3087.778 kb on + strand, within Dsui_2890at 3087.873 kb on + strand, within Dsui_2890at 3087.942 kb on + strandat 3087.983 kb on - strandat 3088.067 kb on + strandat 3088.080 kb on - strandat 3088.143 kb on - strandat 3088.144 kb on - strandat 3088.229 kb on + strand, within Dsui_2891at 3088.420 kb on + strand, within Dsui_2891at 3088.444 kb on + strand, within Dsui_2891at 3088.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,085,269 - +0.4
3,085,305 + +0.0
3,085,373 - -0.6
3,085,478 + Dsui_2889 0.20 -0.4
3,085,630 + Dsui_2889 0.39 +0.1
3,085,718 - Dsui_2889 0.50 -0.5
3,085,745 - -0.6
3,085,826 + Dsui_2889 0.63 +0.8
3,085,870 + Dsui_2889 0.69 -0.5
3,086,024 + Dsui_2889 0.88 -0.8
3,086,024 + Dsui_2889 0.88 +0.5
3,086,034 + Dsui_2889 0.89 -0.4
3,086,357 + -1.1
3,086,365 - -1.3
3,086,404 + +1.4
3,086,468 - Dsui_2890 0.15 -0.7
3,086,640 + Dsui_2890 0.24 -0.9
3,086,648 - Dsui_2890 0.25 +0.3
3,086,659 + Dsui_2890 0.25 -1.3
3,086,748 - Dsui_2890 0.30 -0.8
3,086,770 - Dsui_2890 0.31 +0.3
3,086,808 - +1.0
3,086,823 + Dsui_2890 0.34 +0.2
3,086,826 - Dsui_2890 0.34 -0.3
3,086,857 + Dsui_2890 0.35 +0.6
3,086,890 + Dsui_2890 0.37 -1.0
3,087,017 - Dsui_2890 0.44 -0.3
3,087,166 - Dsui_2890 0.51 -1.0
3,087,225 - Dsui_2890 0.54 +0.3
3,087,490 + Dsui_2890 0.68 -0.6
3,087,498 - Dsui_2890 0.69 -0.7
3,087,714 - Dsui_2890 0.80 -0.8
3,087,778 + Dsui_2890 0.83 -2.1
3,087,873 + Dsui_2890 0.88 -0.3
3,087,942 + -1.1
3,087,983 - -1.3
3,088,067 + +0.1
3,088,080 - -0.5
3,088,143 - -0.6
3,088,144 - -0.7
3,088,229 + Dsui_2891 0.25 -0.6
3,088,420 + Dsui_2891 0.72 -0.7
3,088,444 + Dsui_2891 0.78 -0.8
3,088,449 + -0.0

Or see this region's nucleotide sequence