Strain Fitness in Dechlorosoma suillum PS around Dsui_2743

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2742 and Dsui_2743 are separated by 443 nucleotidesDsui_2743 and Dsui_2744 are separated by 135 nucleotidesDsui_2744 and Dsui_2745 are separated by 97 nucleotides Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567 _2742 Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619 _2743 Dsui_2744: Dsui_2744 - Protein of unknown function (DUF1236), at 2,898,755 to 2,899,300 _2744 Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026 _2745 Position (kb) 2898 2899Strain fitness (log2 ratio) -1 0 1 2at 2897.131 kb on - strand, within Dsui_2742at 2897.133 kb on - strand, within Dsui_2742at 2897.187 kb on + strand, within Dsui_2742at 2897.280 kb on - strand, within Dsui_2742at 2897.297 kb on - strand, within Dsui_2742at 2897.325 kb on + strandat 2897.410 kb on - strand, within Dsui_2742at 2897.435 kb on - strand, within Dsui_2742at 2897.470 kb on - strandat 2897.521 kb on - strandat 2897.814 kb on + strandat 2897.873 kb on + strandat 2898.269 kb on - strandat 2898.446 kb on + strandat 2898.582 kb on + strandat 2898.621 kb on - strandat 2898.728 kb on + strandat 2898.728 kb on + strandat 2898.801 kb on + strandat 2898.801 kb on + strandat 2898.883 kb on + strand, within Dsui_2744at 2898.904 kb on - strandat 2899.163 kb on - strand, within Dsui_2744at 2899.210 kb on - strandat 2899.230 kb on + strand, within Dsui_2744at 2899.260 kb on + strandat 2899.445 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
2,897,131 - Dsui_2742 0.65 -0.1
2,897,133 - Dsui_2742 0.66 -0.7
2,897,187 + Dsui_2742 0.70 -1.1
2,897,280 - Dsui_2742 0.77 -0.6
2,897,297 - Dsui_2742 0.79 +0.1
2,897,325 + -0.1
2,897,410 - Dsui_2742 0.88 -1.3
2,897,435 - Dsui_2742 0.89 -0.5
2,897,470 - +0.4
2,897,521 - -1.3
2,897,814 + +1.2
2,897,873 + -0.1
2,898,269 - +0.3
2,898,446 + +1.9
2,898,582 + -0.4
2,898,621 - +1.9
2,898,728 + -0.7
2,898,728 + +1.1
2,898,801 + -0.3
2,898,801 + -1.0
2,898,883 + Dsui_2744 0.23 -0.4
2,898,904 - +1.9
2,899,163 - Dsui_2744 0.75 -1.0
2,899,210 - -0.7
2,899,230 + Dsui_2744 0.87 -0.4
2,899,260 + -0.8
2,899,445 + -0.1

Or see this region's nucleotide sequence