Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2740 and Dsui_2741 are separated by 11 nucleotides Dsui_2741 and Dsui_2742 are separated by 25 nucleotides Dsui_2742 and Dsui_2743 are separated by 443 nucleotides
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Dsui_2741: Dsui_2741 - PAS domain S-box, at 2,895,710 to 2,896,276
_2741
Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567
_2742
Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619
_2743
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2895.343 kb on + strand at 2895.441 kb on + strand at 2895.446 kb on + strand, within Dsui_2740 at 2895.494 kb on - strand at 2895.516 kb on - strand at 2895.607 kb on + strand, within Dsui_2740 at 2895.658 kb on - strand at 2895.673 kb on + strand at 2895.704 kb on + strand at 2895.712 kb on - strand at 2895.735 kb on + strand at 2895.744 kb on + strand at 2895.759 kb on + strand at 2895.784 kb on + strand, within Dsui_2741 at 2895.859 kb on + strand, within Dsui_2741 at 2895.864 kb on - strand at 2895.883 kb on - strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.953 kb on - strand, within Dsui_2741 at 2895.957 kb on - strand at 2895.957 kb on - strand, within Dsui_2741 at 2896.043 kb on - strand, within Dsui_2741 at 2896.220 kb on - strand at 2896.251 kb on - strand at 2896.269 kb on - strand at 2896.278 kb on - strand at 2896.329 kb on + strand at 2896.383 kb on + strand at 2896.396 kb on - strand at 2896.512 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.627 kb on + strand, within Dsui_2742 at 2896.635 kb on - strand, within Dsui_2742 at 2896.801 kb on - strand, within Dsui_2742 at 2896.838 kb on - strand, within Dsui_2742 at 2896.875 kb on + strand at 2897.131 kb on - strand, within Dsui_2742 at 2897.133 kb on - strand, within Dsui_2742 at 2897.187 kb on + strand, within Dsui_2742 at 2897.280 kb on - strand, within Dsui_2742 at 2897.297 kb on - strand, within Dsui_2742 at 2897.325 kb on + strand at 2897.410 kb on - strand, within Dsui_2742 at 2897.435 kb on - strand, within Dsui_2742 at 2897.470 kb on - strand at 2897.521 kb on - strand at 2897.814 kb on + strand at 2897.873 kb on + strand at 2898.269 kb on - strand at 2898.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,895,343 + +1.3 2,895,441 + -0.9 2,895,446 + Dsui_2740 0.66 -0.9 2,895,494 - -0.1 2,895,516 - +1.9 2,895,607 + Dsui_2740 0.88 -0.9 2,895,658 - +0.3 2,895,673 + -1.5 2,895,704 + -0.6 2,895,712 - -1.0 2,895,735 + -0.2 2,895,744 + -0.5 2,895,759 + +0.2 2,895,784 + Dsui_2741 0.13 -0.9 2,895,859 + Dsui_2741 0.26 -2.3 2,895,864 - +1.3 2,895,883 - Dsui_2741 0.31 +1.2 2,895,944 + Dsui_2741 0.41 -0.7 2,895,944 + Dsui_2741 0.41 -1.3 2,895,944 + Dsui_2741 0.41 -1.8 2,895,953 - Dsui_2741 0.43 -0.2 2,895,957 - -0.4 2,895,957 - Dsui_2741 0.44 -0.2 2,896,043 - Dsui_2741 0.59 +0.1 2,896,220 - -0.2 2,896,251 - -1.3 2,896,269 - -0.7 2,896,278 - -0.1 2,896,329 + -2.3 2,896,383 + +0.9 2,896,396 - +0.2 2,896,512 - Dsui_2742 0.17 -1.4 2,896,536 - Dsui_2742 0.18 -1.4 2,896,536 - Dsui_2742 0.18 -0.1 2,896,606 - Dsui_2742 0.24 +0.1 2,896,606 - Dsui_2742 0.24 -0.1 2,896,606 - Dsui_2742 0.24 -0.7 2,896,627 + Dsui_2742 0.26 -1.7 2,896,635 - Dsui_2742 0.26 -0.9 2,896,801 - Dsui_2742 0.39 -1.4 2,896,838 - Dsui_2742 0.42 -1.7 2,896,875 + +0.3 2,897,131 - Dsui_2742 0.65 -0.1 2,897,133 - Dsui_2742 0.66 -0.7 2,897,187 + Dsui_2742 0.70 -1.1 2,897,280 - Dsui_2742 0.77 -0.6 2,897,297 - Dsui_2742 0.79 +0.1 2,897,325 + -0.1 2,897,410 - Dsui_2742 0.88 -1.3 2,897,435 - Dsui_2742 0.89 -0.5 2,897,470 - +0.4 2,897,521 - -1.3 2,897,814 + +1.2 2,897,873 + -0.1 2,898,269 - +0.3 2,898,446 + +1.9
Or see this region's nucleotide sequence