Strain Fitness in Dechlorosoma suillum PS around Dsui_2612

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2609 and Dsui_2610 are separated by 78 nucleotidesDsui_2610 and Dsui_2611 are separated by 7 nucleotidesDsui_2611 and Dsui_2612 overlap by 4 nucleotidesDsui_2612 and Dsui_2613 overlap by 4 nucleotides Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883 _2609 Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330 _2610 Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667 _2611 Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197 _2612 Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207 _2613 Position (kb) 2765 2766 2767Strain fitness (log2 ratio) -2 -1 0 1 2at 2764.727 kb on - strand, within Dsui_2609at 2764.755 kb on - strand, within Dsui_2609at 2764.797 kb on + strand, within Dsui_2609at 2764.806 kb on + strandat 2764.845 kb on + strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strandat 2764.994 kb on - strandat 2765.068 kb on - strand, within Dsui_2610at 2765.125 kb on - strand, within Dsui_2610at 2765.178 kb on - strand, within Dsui_2610at 2765.193 kb on - strandat 2765.195 kb on + strand, within Dsui_2610at 2765.254 kb on - strand, within Dsui_2610at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.427 kb on + strandat 2765.474 kb on - strand, within Dsui_2611at 2765.564 kb on - strand, within Dsui_2611at 2765.638 kb on - strandat 2765.638 kb on - strandat 2765.670 kb on + strandat 2765.736 kb on - strand, within Dsui_2612at 2765.792 kb on - strandat 2765.792 kb on - strand, within Dsui_2612at 2765.904 kb on - strand, within Dsui_2612at 2765.991 kb on + strand, within Dsui_2612at 2766.118 kb on + strand, within Dsui_2612at 2766.165 kb on - strandat 2766.169 kb on + strandat 2766.276 kb on + strandat 2766.415 kb on + strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.512 kb on + strandat 2766.519 kb on - strand, within Dsui_2613at 2766.563 kb on - strand, within Dsui_2613at 2766.691 kb on - strand, within Dsui_2613at 2766.734 kb on - strand, within Dsui_2613at 2766.797 kb on - strand, within Dsui_2613at 2766.803 kb on - strand, within Dsui_2613at 2766.927 kb on + strand, within Dsui_2613at 2767.067 kb on + strandat 2767.144 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,764,727 - Dsui_2609 0.41 -0.3
2,764,755 - Dsui_2609 0.51 +0.4
2,764,797 + Dsui_2609 0.67 -0.7
2,764,806 + -0.0
2,764,845 + Dsui_2609 0.85 -1.0
2,764,853 - Dsui_2609 0.88 +1.0
2,764,853 - Dsui_2609 0.88 -1.0
2,764,853 - +1.4
2,764,994 - -1.0
2,765,068 - Dsui_2610 0.29 -0.3
2,765,125 - Dsui_2610 0.44 -1.2
2,765,178 - Dsui_2610 0.59 -0.2
2,765,193 - +1.0
2,765,195 + Dsui_2610 0.63 -1.7
2,765,254 - Dsui_2610 0.79 -0.4
2,765,425 - Dsui_2611 0.26 -2.2
2,765,425 - Dsui_2611 0.26 +2.0
2,765,425 - Dsui_2611 0.26 -0.2
2,765,427 + +1.0
2,765,474 - Dsui_2611 0.41 +0.0
2,765,564 - Dsui_2611 0.68 -0.8
2,765,638 - +0.0
2,765,638 - -0.8
2,765,670 + -1.7
2,765,736 - Dsui_2612 0.13 +0.1
2,765,792 - +0.4
2,765,792 - Dsui_2612 0.24 -0.3
2,765,904 - Dsui_2612 0.45 -0.6
2,765,991 + Dsui_2612 0.61 +1.0
2,766,118 + Dsui_2612 0.85 -0.4
2,766,165 - -2.6
2,766,169 + -1.2
2,766,276 + -0.2
2,766,415 + Dsui_2613 0.22 -1.2
2,766,423 - Dsui_2613 0.23 +0.1
2,766,423 - Dsui_2613 0.23 -0.3
2,766,423 - Dsui_2613 0.23 -0.4
2,766,512 + -0.3
2,766,519 - Dsui_2613 0.32 -0.6
2,766,563 - Dsui_2613 0.36 -1.0
2,766,691 - Dsui_2613 0.49 +1.4
2,766,734 - Dsui_2613 0.53 -0.8
2,766,797 - Dsui_2613 0.59 -0.5
2,766,803 - Dsui_2613 0.60 +0.8
2,766,927 + Dsui_2613 0.72 -0.2
2,767,067 + +0.4
2,767,144 + -1.2

Or see this region's nucleotide sequence