Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2523 and Dsui_2524 are separated by 49 nucleotides Dsui_2524 and Dsui_2525 overlap by 20 nucleotides Dsui_2525 and Dsui_2526 are separated by 191 nucleotides Dsui_2526 and Dsui_2527 overlap by 4 nucleotides
Dsui_2523: Dsui_2523 - hypothetical protein, at 2,674,075 to 2,674,617
_2523
Dsui_2524: Dsui_2524 - putative conserved small protein, at 2,674,667 to 2,675,002
_2524
Dsui_2525: Dsui_2525 - phage-related protein, at 2,674,983 to 2,675,360
_2525
Dsui_2526: Dsui_2526 - site-specific recombinase, DNA invertase Pin, at 2,675,552 to 2,676,145
_2526
Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174
_2527
Position (kb)
2675
2676
2677 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2675.074 kb on - strand, within Dsui_2525 at 2675.109 kb on + strand, within Dsui_2525 at 2675.151 kb on - strand, within Dsui_2525 at 2675.255 kb on - strand, within Dsui_2525 at 2675.342 kb on + strand at 2675.350 kb on - strand at 2675.368 kb on + strand at 2675.452 kb on - strand at 2675.546 kb on - strand at 2675.569 kb on - strand at 2675.590 kb on - strand at 2675.593 kb on + strand at 2675.611 kb on - strand at 2675.631 kb on - strand, within Dsui_2526 at 2675.732 kb on + strand, within Dsui_2526 at 2675.833 kb on + strand, within Dsui_2526 at 2675.921 kb on - strand, within Dsui_2526 at 2676.040 kb on + strand, within Dsui_2526 at 2676.077 kb on + strand, within Dsui_2526 at 2676.092 kb on - strand at 2676.104 kb on - strand at 2676.201 kb on - strand at 2676.247 kb on - strand at 2676.251 kb on - strand at 2676.300 kb on + strand at 2676.335 kb on - strand at 2676.335 kb on - strand at 2676.371 kb on - strand at 2676.391 kb on + strand at 2676.586 kb on - strand, within Dsui_2527 at 2676.586 kb on - strand at 2676.874 kb on + strand, within Dsui_2527 at 2676.933 kb on + strand, within Dsui_2527 at 2676.933 kb on + strand, within Dsui_2527 at 2676.933 kb on + strand, within Dsui_2527 at 2676.941 kb on - strand, within Dsui_2527 at 2676.941 kb on - strand at 2676.941 kb on - strand, within Dsui_2527 at 2676.941 kb on - strand at 2676.941 kb on - strand, within Dsui_2527 at 2677.033 kb on - strand, within Dsui_2527
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,675,074 - Dsui_2525 0.24 -0.1 2,675,109 + Dsui_2525 0.33 -0.7 2,675,151 - Dsui_2525 0.44 -0.9 2,675,255 - Dsui_2525 0.72 -1.1 2,675,342 + +0.1 2,675,350 - -0.8 2,675,368 + +0.3 2,675,452 - +1.3 2,675,546 - +0.3 2,675,569 - +0.3 2,675,590 - -0.1 2,675,593 + -1.6 2,675,611 - +0.9 2,675,631 - Dsui_2526 0.13 -0.9 2,675,732 + Dsui_2526 0.30 -2.3 2,675,833 + Dsui_2526 0.47 -0.5 2,675,921 - Dsui_2526 0.62 -1.1 2,676,040 + Dsui_2526 0.82 -0.8 2,676,077 + Dsui_2526 0.88 -1.2 2,676,092 - +1.9 2,676,104 - -2.1 2,676,201 - -1.1 2,676,247 - +0.1 2,676,251 - -0.4 2,676,300 + -0.1 2,676,335 - +0.3 2,676,335 - +0.3 2,676,371 - -0.6 2,676,391 + -0.5 2,676,586 - Dsui_2527 0.15 -2.2 2,676,586 - -0.1 2,676,874 + Dsui_2527 0.24 +1.5 2,676,933 + Dsui_2527 0.26 -1.7 2,676,933 + Dsui_2527 0.26 -1.7 2,676,933 + Dsui_2527 0.26 -0.7 2,676,941 - Dsui_2527 0.26 -1.1 2,676,941 - -1.1 2,676,941 - Dsui_2527 0.26 -1.3 2,676,941 - +1.2 2,676,941 - Dsui_2527 0.26 -0.8 2,677,033 - Dsui_2527 0.29 -1.7
Or see this region's nucleotide sequence