Strain Fitness in Dechlorosoma suillum PS around Dsui_2526

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2523 and Dsui_2524 are separated by 49 nucleotidesDsui_2524 and Dsui_2525 overlap by 20 nucleotidesDsui_2525 and Dsui_2526 are separated by 191 nucleotidesDsui_2526 and Dsui_2527 overlap by 4 nucleotides Dsui_2523: Dsui_2523 - hypothetical protein, at 2,674,075 to 2,674,617 _2523 Dsui_2524: Dsui_2524 - putative conserved small protein, at 2,674,667 to 2,675,002 _2524 Dsui_2525: Dsui_2525 - phage-related protein, at 2,674,983 to 2,675,360 _2525 Dsui_2526: Dsui_2526 - site-specific recombinase, DNA invertase Pin, at 2,675,552 to 2,676,145 _2526 Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174 _2527 Position (kb) 2675 2676 2677Strain fitness (log2 ratio) -2 -1 0 1 2at 2675.074 kb on - strand, within Dsui_2525at 2675.109 kb on + strand, within Dsui_2525at 2675.151 kb on - strand, within Dsui_2525at 2675.255 kb on - strand, within Dsui_2525at 2675.342 kb on + strandat 2675.350 kb on - strandat 2675.368 kb on + strandat 2675.452 kb on - strandat 2675.546 kb on - strandat 2675.569 kb on - strandat 2675.590 kb on - strandat 2675.593 kb on + strandat 2675.611 kb on - strandat 2675.631 kb on - strand, within Dsui_2526at 2675.732 kb on + strand, within Dsui_2526at 2675.833 kb on + strand, within Dsui_2526at 2675.921 kb on - strand, within Dsui_2526at 2676.040 kb on + strand, within Dsui_2526at 2676.077 kb on + strand, within Dsui_2526at 2676.092 kb on - strandat 2676.104 kb on - strandat 2676.201 kb on - strandat 2676.247 kb on - strandat 2676.251 kb on - strandat 2676.300 kb on + strandat 2676.335 kb on - strandat 2676.335 kb on - strandat 2676.371 kb on - strandat 2676.391 kb on + strandat 2676.586 kb on - strand, within Dsui_2527at 2676.586 kb on - strandat 2676.874 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.933 kb on + strand, within Dsui_2527at 2676.941 kb on - strand, within Dsui_2527at 2676.941 kb on - strandat 2676.941 kb on - strand, within Dsui_2527at 2676.941 kb on - strandat 2676.941 kb on - strand, within Dsui_2527at 2677.033 kb on - strand, within Dsui_2527

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,675,074 - Dsui_2525 0.24 -0.1
2,675,109 + Dsui_2525 0.33 -0.7
2,675,151 - Dsui_2525 0.44 -0.9
2,675,255 - Dsui_2525 0.72 -1.1
2,675,342 + +0.1
2,675,350 - -0.8
2,675,368 + +0.3
2,675,452 - +1.3
2,675,546 - +0.3
2,675,569 - +0.3
2,675,590 - -0.1
2,675,593 + -1.6
2,675,611 - +0.9
2,675,631 - Dsui_2526 0.13 -0.9
2,675,732 + Dsui_2526 0.30 -2.3
2,675,833 + Dsui_2526 0.47 -0.5
2,675,921 - Dsui_2526 0.62 -1.1
2,676,040 + Dsui_2526 0.82 -0.8
2,676,077 + Dsui_2526 0.88 -1.2
2,676,092 - +1.9
2,676,104 - -2.1
2,676,201 - -1.1
2,676,247 - +0.1
2,676,251 - -0.4
2,676,300 + -0.1
2,676,335 - +0.3
2,676,335 - +0.3
2,676,371 - -0.6
2,676,391 + -0.5
2,676,586 - Dsui_2527 0.15 -2.2
2,676,586 - -0.1
2,676,874 + Dsui_2527 0.24 +1.5
2,676,933 + Dsui_2527 0.26 -1.7
2,676,933 + Dsui_2527 0.26 -1.7
2,676,933 + Dsui_2527 0.26 -0.7
2,676,941 - Dsui_2527 0.26 -1.1
2,676,941 - -1.1
2,676,941 - Dsui_2527 0.26 -1.3
2,676,941 - +1.2
2,676,941 - Dsui_2527 0.26 -0.8
2,677,033 - Dsui_2527 0.29 -1.7

Or see this region's nucleotide sequence