Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2493 and Dsui_2494 are separated by 71 nucleotides Dsui_2494 and Dsui_2495 are separated by 15 nucleotides Dsui_2495 and Dsui_2496 are separated by 2 nucleotides Dsui_2496 and Dsui_2497 overlap by 4 nucleotides Dsui_2497 and Dsui_2498 are separated by 16 nucleotides Dsui_2498 and Dsui_2499 overlap by 4 nucleotides Dsui_2499 and Dsui_2500 are separated by 52 nucleotides
Dsui_2493: Dsui_2493 - Hg(II)-responsive transcriptional regulator, at 2,643,733 to 2,644,167
_2493
Dsui_2494: Dsui_2494 - MerT mercuric transport protein, at 2,644,239 to 2,644,589
_2494
Dsui_2495: Dsui_2495 - mercuric transport protein periplasmic component, at 2,644,605 to 2,644,880
_2495
Dsui_2496: Dsui_2496 - Membrane transport protein MerF, at 2,644,883 to 2,645,128
_2496
Dsui_2497: Dsui_2497 - mercuric reductase, at 2,645,125 to 2,646,771
_2497
Dsui_2498: Dsui_2498 - mercuric resistance transcriptional repressor protein MerD, at 2,646,788 to 2,647,153
_2498
Dsui_2499: Dsui_2499 - MerE protein, at 2,647,150 to 2,647,386
_2499
Dsui_2500: Dsui_2500 - site-specific recombinase, DNA invertase Pin, at 2,647,439 to 2,648,053
_2500
Position (kb)
2645
2646
2647 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2644.210 kb on + strand at 2644.269 kb on + strand at 2644.665 kb on + strand, within Dsui_2495 at 2644.672 kb on + strand, within Dsui_2495 at 2644.674 kb on + strand, within Dsui_2495 at 2644.680 kb on - strand, within Dsui_2495 at 2644.692 kb on + strand, within Dsui_2495 at 2644.700 kb on - strand, within Dsui_2495 at 2644.742 kb on + strand, within Dsui_2495 at 2644.798 kb on + strand, within Dsui_2495 at 2644.801 kb on - strand at 2644.809 kb on + strand, within Dsui_2495 at 2644.832 kb on + strand, within Dsui_2495 at 2644.866 kb on - strand at 2644.869 kb on + strand at 2644.869 kb on + strand at 2644.869 kb on + strand at 2644.877 kb on - strand at 2644.909 kb on + strand, within Dsui_2496 at 2644.953 kb on + strand, within Dsui_2496 at 2645.024 kb on - strand at 2645.084 kb on + strand, within Dsui_2496 at 2645.146 kb on + strand at 2645.146 kb on + strand at 2645.151 kb on + strand at 2645.151 kb on + strand at 2645.213 kb on + strand at 2645.255 kb on - strand at 2645.526 kb on + strand, within Dsui_2497 at 2645.634 kb on + strand, within Dsui_2497 at 2645.634 kb on + strand, within Dsui_2497 at 2645.637 kb on - strand at 2645.736 kb on + strand, within Dsui_2497 at 2645.740 kb on - strand, within Dsui_2497 at 2645.740 kb on - strand at 2645.913 kb on - strand, within Dsui_2497 at 2645.929 kb on + strand, within Dsui_2497 at 2646.027 kb on + strand, within Dsui_2497 at 2646.377 kb on + strand, within Dsui_2497 at 2646.490 kb on - strand, within Dsui_2497 at 2646.803 kb on - strand at 2646.852 kb on + strand, within Dsui_2498 at 2646.876 kb on + strand, within Dsui_2498 at 2646.908 kb on - strand at 2646.908 kb on - strand, within Dsui_2498 at 2646.942 kb on - strand, within Dsui_2498 at 2646.979 kb on - strand, within Dsui_2498 at 2647.155 kb on - strand at 2647.222 kb on + strand, within Dsui_2499 at 2647.227 kb on + strand, within Dsui_2499 at 2647.235 kb on - strand, within Dsui_2499 at 2647.299 kb on + strand, within Dsui_2499 at 2647.307 kb on - strand at 2647.324 kb on - strand at 2647.474 kb on - strand at 2647.692 kb on + strand, within Dsui_2500 at 2647.748 kb on + strand, within Dsui_2500 at 2647.769 kb on + strand, within Dsui_2500
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,644,210 + -0.6 2,644,269 + -0.7 2,644,665 + Dsui_2495 0.22 -0.9 2,644,672 + Dsui_2495 0.24 +1.0 2,644,674 + Dsui_2495 0.25 -1.0 2,644,680 - Dsui_2495 0.27 -0.8 2,644,692 + Dsui_2495 0.32 +0.8 2,644,700 - Dsui_2495 0.34 -1.6 2,644,742 + Dsui_2495 0.50 -0.8 2,644,798 + Dsui_2495 0.70 -0.6 2,644,801 - +2.0 2,644,809 + Dsui_2495 0.74 -0.4 2,644,832 + Dsui_2495 0.82 +0.2 2,644,866 - -1.0 2,644,869 + -1.7 2,644,869 + -0.2 2,644,869 + -0.4 2,644,877 - +1.0 2,644,909 + Dsui_2496 0.11 -0.4 2,644,953 + Dsui_2496 0.28 -2.4 2,645,024 - +0.4 2,645,084 + Dsui_2496 0.82 -1.1 2,645,146 + -1.5 2,645,146 + -1.4 2,645,151 + -0.4 2,645,151 + -1.4 2,645,213 + -1.3 2,645,255 - +1.0 2,645,526 + Dsui_2497 0.24 +0.2 2,645,634 + Dsui_2497 0.31 -1.7 2,645,634 + Dsui_2497 0.31 -0.4 2,645,637 - +1.0 2,645,736 + Dsui_2497 0.37 -0.1 2,645,740 - Dsui_2497 0.37 -0.4 2,645,740 - -0.6 2,645,913 - Dsui_2497 0.48 -1.0 2,645,929 + Dsui_2497 0.49 -0.8 2,646,027 + Dsui_2497 0.55 -2.4 2,646,377 + Dsui_2497 0.76 -1.5 2,646,490 - Dsui_2497 0.83 -0.2 2,646,803 - -0.7 2,646,852 + Dsui_2498 0.17 -1.0 2,646,876 + Dsui_2498 0.24 -1.9 2,646,908 - +1.2 2,646,908 - Dsui_2498 0.33 -0.9 2,646,942 - Dsui_2498 0.42 +0.7 2,646,979 - Dsui_2498 0.52 -1.7 2,647,155 - -0.8 2,647,222 + Dsui_2499 0.30 -1.2 2,647,227 + Dsui_2499 0.32 -3.4 2,647,235 - Dsui_2499 0.36 -1.6 2,647,299 + Dsui_2499 0.63 +0.2 2,647,307 - -0.4 2,647,324 - +1.0 2,647,474 - -1.2 2,647,692 + Dsui_2500 0.41 -0.4 2,647,748 + Dsui_2500 0.50 -1.6 2,647,769 + Dsui_2500 0.54 +0.1
Or see this region's nucleotide sequence