Strain Fitness in Dechlorosoma suillum PS around Dsui_2497

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2493 and Dsui_2494 are separated by 71 nucleotidesDsui_2494 and Dsui_2495 are separated by 15 nucleotidesDsui_2495 and Dsui_2496 are separated by 2 nucleotidesDsui_2496 and Dsui_2497 overlap by 4 nucleotidesDsui_2497 and Dsui_2498 are separated by 16 nucleotidesDsui_2498 and Dsui_2499 overlap by 4 nucleotidesDsui_2499 and Dsui_2500 are separated by 52 nucleotides Dsui_2493: Dsui_2493 - Hg(II)-responsive transcriptional regulator, at 2,643,733 to 2,644,167 _2493 Dsui_2494: Dsui_2494 - MerT mercuric transport protein, at 2,644,239 to 2,644,589 _2494 Dsui_2495: Dsui_2495 - mercuric transport protein periplasmic component, at 2,644,605 to 2,644,880 _2495 Dsui_2496: Dsui_2496 - Membrane transport protein MerF, at 2,644,883 to 2,645,128 _2496 Dsui_2497: Dsui_2497 - mercuric reductase, at 2,645,125 to 2,646,771 _2497 Dsui_2498: Dsui_2498 - mercuric resistance transcriptional repressor protein MerD, at 2,646,788 to 2,647,153 _2498 Dsui_2499: Dsui_2499 - MerE protein, at 2,647,150 to 2,647,386 _2499 Dsui_2500: Dsui_2500 - site-specific recombinase, DNA invertase Pin, at 2,647,439 to 2,648,053 _2500 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2644.210 kb on + strandat 2644.269 kb on + strandat 2644.665 kb on + strand, within Dsui_2495at 2644.672 kb on + strand, within Dsui_2495at 2644.674 kb on + strand, within Dsui_2495at 2644.680 kb on - strand, within Dsui_2495at 2644.692 kb on + strand, within Dsui_2495at 2644.700 kb on - strand, within Dsui_2495at 2644.742 kb on + strand, within Dsui_2495at 2644.798 kb on + strand, within Dsui_2495at 2644.801 kb on - strandat 2644.809 kb on + strand, within Dsui_2495at 2644.832 kb on + strand, within Dsui_2495at 2644.866 kb on - strandat 2644.869 kb on + strandat 2644.869 kb on + strandat 2644.869 kb on + strandat 2644.877 kb on - strandat 2644.909 kb on + strand, within Dsui_2496at 2644.953 kb on + strand, within Dsui_2496at 2645.024 kb on - strandat 2645.084 kb on + strand, within Dsui_2496at 2645.146 kb on + strandat 2645.146 kb on + strandat 2645.151 kb on + strandat 2645.151 kb on + strandat 2645.213 kb on + strandat 2645.255 kb on - strandat 2645.526 kb on + strand, within Dsui_2497at 2645.634 kb on + strand, within Dsui_2497at 2645.634 kb on + strand, within Dsui_2497at 2645.637 kb on - strandat 2645.736 kb on + strand, within Dsui_2497at 2645.740 kb on - strand, within Dsui_2497at 2645.740 kb on - strandat 2645.913 kb on - strand, within Dsui_2497at 2645.929 kb on + strand, within Dsui_2497at 2646.027 kb on + strand, within Dsui_2497at 2646.377 kb on + strand, within Dsui_2497at 2646.490 kb on - strand, within Dsui_2497at 2646.803 kb on - strandat 2646.852 kb on + strand, within Dsui_2498at 2646.876 kb on + strand, within Dsui_2498at 2646.908 kb on - strandat 2646.908 kb on - strand, within Dsui_2498at 2646.942 kb on - strand, within Dsui_2498at 2646.979 kb on - strand, within Dsui_2498at 2647.155 kb on - strandat 2647.222 kb on + strand, within Dsui_2499at 2647.227 kb on + strand, within Dsui_2499at 2647.235 kb on - strand, within Dsui_2499at 2647.299 kb on + strand, within Dsui_2499at 2647.307 kb on - strandat 2647.324 kb on - strandat 2647.474 kb on - strandat 2647.692 kb on + strand, within Dsui_2500at 2647.748 kb on + strand, within Dsui_2500at 2647.769 kb on + strand, within Dsui_2500

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,644,210 + -0.6
2,644,269 + -0.7
2,644,665 + Dsui_2495 0.22 -0.9
2,644,672 + Dsui_2495 0.24 +1.0
2,644,674 + Dsui_2495 0.25 -1.0
2,644,680 - Dsui_2495 0.27 -0.8
2,644,692 + Dsui_2495 0.32 +0.8
2,644,700 - Dsui_2495 0.34 -1.6
2,644,742 + Dsui_2495 0.50 -0.8
2,644,798 + Dsui_2495 0.70 -0.6
2,644,801 - +2.0
2,644,809 + Dsui_2495 0.74 -0.4
2,644,832 + Dsui_2495 0.82 +0.2
2,644,866 - -1.0
2,644,869 + -1.7
2,644,869 + -0.2
2,644,869 + -0.4
2,644,877 - +1.0
2,644,909 + Dsui_2496 0.11 -0.4
2,644,953 + Dsui_2496 0.28 -2.4
2,645,024 - +0.4
2,645,084 + Dsui_2496 0.82 -1.1
2,645,146 + -1.5
2,645,146 + -1.4
2,645,151 + -0.4
2,645,151 + -1.4
2,645,213 + -1.3
2,645,255 - +1.0
2,645,526 + Dsui_2497 0.24 +0.2
2,645,634 + Dsui_2497 0.31 -1.7
2,645,634 + Dsui_2497 0.31 -0.4
2,645,637 - +1.0
2,645,736 + Dsui_2497 0.37 -0.1
2,645,740 - Dsui_2497 0.37 -0.4
2,645,740 - -0.6
2,645,913 - Dsui_2497 0.48 -1.0
2,645,929 + Dsui_2497 0.49 -0.8
2,646,027 + Dsui_2497 0.55 -2.4
2,646,377 + Dsui_2497 0.76 -1.5
2,646,490 - Dsui_2497 0.83 -0.2
2,646,803 - -0.7
2,646,852 + Dsui_2498 0.17 -1.0
2,646,876 + Dsui_2498 0.24 -1.9
2,646,908 - +1.2
2,646,908 - Dsui_2498 0.33 -0.9
2,646,942 - Dsui_2498 0.42 +0.7
2,646,979 - Dsui_2498 0.52 -1.7
2,647,155 - -0.8
2,647,222 + Dsui_2499 0.30 -1.2
2,647,227 + Dsui_2499 0.32 -3.4
2,647,235 - Dsui_2499 0.36 -1.6
2,647,299 + Dsui_2499 0.63 +0.2
2,647,307 - -0.4
2,647,324 - +1.0
2,647,474 - -1.2
2,647,692 + Dsui_2500 0.41 -0.4
2,647,748 + Dsui_2500 0.50 -1.6
2,647,769 + Dsui_2500 0.54 +0.1

Or see this region's nucleotide sequence