Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2452 and Dsui_2453 are separated by 282 nucleotides Dsui_2453 and Dsui_2454 are separated by 112 nucleotides Dsui_2454 and Dsui_2455 are separated by 30 nucleotides
Dsui_2452: Dsui_2452 - L-aspartate oxidase, at 2,610,262 to 2,611,839
_2452
Dsui_2453: Dsui_2453 - RNA polymerase sigma factor RpoE, at 2,612,122 to 2,612,721
_2453
Dsui_2454: Dsui_2454 - Positive regulator of sigma E activity, at 2,612,834 to 2,613,265
_2454
Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741
_2455
Position (kb)
2612
2613
2614 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2611.854 kb on - strand at 2611.885 kb on - strand at 2612.091 kb on + strand at 2612.091 kb on + strand at 2612.091 kb on + strand at 2612.092 kb on + strand at 2612.786 kb on + strand at 2612.786 kb on + strand at 2612.818 kb on + strand at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2612.916 kb on + strand, within Dsui_2454 at 2613.137 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.211 kb on + strand, within Dsui_2454 at 2613.245 kb on + strand at 2613.274 kb on + strand at 2613.402 kb on + strand at 2613.402 kb on + strand at 2613.426 kb on + strand at 2613.437 kb on - strand at 2613.456 kb on - strand, within Dsui_2455 at 2613.478 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.617 kb on + strand, within Dsui_2455 at 2613.636 kb on + strand, within Dsui_2455 at 2613.705 kb on + strand, within Dsui_2455 at 2613.733 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.794 kb on + strand, within Dsui_2455 at 2613.902 kb on + strand, within Dsui_2455 at 2613.903 kb on + strand, within Dsui_2455 at 2613.907 kb on + strand, within Dsui_2455 at 2614.159 kb on + strand, within Dsui_2455 at 2614.167 kb on - strand at 2614.231 kb on + strand, within Dsui_2455 at 2614.248 kb on + strand, within Dsui_2455
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,611,854 - -0.5 2,611,885 - +0.1 2,612,091 + -0.5 2,612,091 + -0.2 2,612,091 + -0.7 2,612,092 + -0.6 2,612,786 + -0.8 2,612,786 + -0.3 2,612,818 + -0.8 2,612,916 + Dsui_2454 0.19 -1.0 2,612,916 + Dsui_2454 0.19 -2.0 2,612,916 + Dsui_2454 0.19 -1.9 2,613,137 + Dsui_2454 0.70 -1.9 2,613,211 + Dsui_2454 0.87 -1.6 2,613,211 + Dsui_2454 0.87 -1.1 2,613,245 + -0.7 2,613,274 + -0.5 2,613,402 + -1.0 2,613,402 + -0.2 2,613,426 + -0.3 2,613,437 - +2.0 2,613,456 - Dsui_2455 0.11 -1.1 2,613,478 + Dsui_2455 0.13 -0.4 2,613,617 + Dsui_2455 0.22 -0.6 2,613,617 + Dsui_2455 0.22 -1.2 2,613,636 + Dsui_2455 0.24 -0.8 2,613,705 + Dsui_2455 0.28 -0.0 2,613,733 + Dsui_2455 0.30 -0.9 2,613,792 + Dsui_2455 0.34 -0.8 2,613,792 + Dsui_2455 0.34 -0.5 2,613,792 + Dsui_2455 0.34 -0.2 2,613,792 + Dsui_2455 0.34 -1.7 2,613,794 + Dsui_2455 0.34 -0.1 2,613,902 + Dsui_2455 0.42 -0.6 2,613,903 + Dsui_2455 0.42 -0.6 2,613,907 + Dsui_2455 0.42 -0.7 2,614,159 + Dsui_2455 0.60 -0.5 2,614,167 - -0.3 2,614,231 + Dsui_2455 0.65 -0.3 2,614,248 + Dsui_2455 0.66 -0.9
Or see this region's nucleotide sequence