Strain Fitness in Dechlorosoma suillum PS around Dsui_2454

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2452 and Dsui_2453 are separated by 282 nucleotidesDsui_2453 and Dsui_2454 are separated by 112 nucleotidesDsui_2454 and Dsui_2455 are separated by 30 nucleotides Dsui_2452: Dsui_2452 - L-aspartate oxidase, at 2,610,262 to 2,611,839 _2452 Dsui_2453: Dsui_2453 - RNA polymerase sigma factor RpoE, at 2,612,122 to 2,612,721 _2453 Dsui_2454: Dsui_2454 - Positive regulator of sigma E activity, at 2,612,834 to 2,613,265 _2454 Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741 _2455 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -2 -1 0 1 2at 2611.854 kb on - strandat 2611.885 kb on - strandat 2612.091 kb on + strandat 2612.091 kb on + strandat 2612.091 kb on + strandat 2612.092 kb on + strandat 2612.786 kb on + strandat 2612.786 kb on + strandat 2612.818 kb on + strandat 2612.916 kb on + strand, within Dsui_2454at 2612.916 kb on + strand, within Dsui_2454at 2612.916 kb on + strand, within Dsui_2454at 2613.137 kb on + strand, within Dsui_2454at 2613.211 kb on + strand, within Dsui_2454at 2613.211 kb on + strand, within Dsui_2454at 2613.245 kb on + strandat 2613.274 kb on + strandat 2613.402 kb on + strandat 2613.402 kb on + strandat 2613.426 kb on + strandat 2613.437 kb on - strandat 2613.456 kb on - strand, within Dsui_2455at 2613.478 kb on + strand, within Dsui_2455at 2613.617 kb on + strand, within Dsui_2455at 2613.617 kb on + strand, within Dsui_2455at 2613.636 kb on + strand, within Dsui_2455at 2613.705 kb on + strand, within Dsui_2455at 2613.733 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.794 kb on + strand, within Dsui_2455at 2613.902 kb on + strand, within Dsui_2455at 2613.903 kb on + strand, within Dsui_2455at 2613.907 kb on + strand, within Dsui_2455at 2614.159 kb on + strand, within Dsui_2455at 2614.167 kb on - strandat 2614.231 kb on + strand, within Dsui_2455at 2614.248 kb on + strand, within Dsui_2455

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,611,854 - -0.5
2,611,885 - +0.1
2,612,091 + -0.5
2,612,091 + -0.2
2,612,091 + -0.7
2,612,092 + -0.6
2,612,786 + -0.8
2,612,786 + -0.3
2,612,818 + -0.8
2,612,916 + Dsui_2454 0.19 -1.0
2,612,916 + Dsui_2454 0.19 -2.0
2,612,916 + Dsui_2454 0.19 -1.9
2,613,137 + Dsui_2454 0.70 -1.9
2,613,211 + Dsui_2454 0.87 -1.6
2,613,211 + Dsui_2454 0.87 -1.1
2,613,245 + -0.7
2,613,274 + -0.5
2,613,402 + -1.0
2,613,402 + -0.2
2,613,426 + -0.3
2,613,437 - +2.0
2,613,456 - Dsui_2455 0.11 -1.1
2,613,478 + Dsui_2455 0.13 -0.4
2,613,617 + Dsui_2455 0.22 -0.6
2,613,617 + Dsui_2455 0.22 -1.2
2,613,636 + Dsui_2455 0.24 -0.8
2,613,705 + Dsui_2455 0.28 -0.0
2,613,733 + Dsui_2455 0.30 -0.9
2,613,792 + Dsui_2455 0.34 -0.8
2,613,792 + Dsui_2455 0.34 -0.5
2,613,792 + Dsui_2455 0.34 -0.2
2,613,792 + Dsui_2455 0.34 -1.7
2,613,794 + Dsui_2455 0.34 -0.1
2,613,902 + Dsui_2455 0.42 -0.6
2,613,903 + Dsui_2455 0.42 -0.6
2,613,907 + Dsui_2455 0.42 -0.7
2,614,159 + Dsui_2455 0.60 -0.5
2,614,167 - -0.3
2,614,231 + Dsui_2455 0.65 -0.3
2,614,248 + Dsui_2455 0.66 -0.9

Or see this region's nucleotide sequence