Strain Fitness in Dechlorosoma suillum PS around Dsui_2306

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2304 and Dsui_2305 overlap by 1 nucleotidesDsui_2305 and Dsui_2306 are separated by 200 nucleotidesDsui_2306 and Dsui_2307 are separated by 31 nucleotidesDsui_2307 and Dsui_2308 are separated by 16 nucleotides Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989 _2304 Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738 _2305 Dsui_2306: Dsui_2306 - transcriptional regulator, at 2,462,939 to 2,463,523 _2306 Dsui_2307: Dsui_2307 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component, at 2,463,555 to 2,464,214 _2307 Dsui_2308: Dsui_2308 - lysophospholipase L1-like esterase, at 2,464,231 to 2,464,854 _2308 Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2462.045 kb on + strandat 2462.061 kb on - strandat 2462.089 kb on - strand, within Dsui_2305at 2462.210 kb on - strand, within Dsui_2305at 2462.272 kb on - strand, within Dsui_2305at 2462.311 kb on - strand, within Dsui_2305at 2462.439 kb on - strand, within Dsui_2305at 2462.458 kb on - strand, within Dsui_2305at 2462.690 kb on + strandat 2462.747 kb on + strandat 2462.747 kb on + strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.755 kb on - strandat 2462.788 kb on + strandat 2462.796 kb on - strandat 2462.806 kb on + strandat 2462.814 kb on - strandat 2462.814 kb on - strandat 2462.820 kb on + strandat 2462.828 kb on - strandat 2462.830 kb on + strandat 2462.838 kb on - strandat 2462.870 kb on - strandat 2463.108 kb on + strand, within Dsui_2306at 2463.116 kb on - strandat 2463.126 kb on - strandat 2463.126 kb on - strand, within Dsui_2306at 2463.138 kb on + strand, within Dsui_2306at 2463.227 kb on + strand, within Dsui_2306at 2463.340 kb on + strand, within Dsui_2306at 2463.405 kb on + strand, within Dsui_2306at 2463.413 kb on - strandat 2463.628 kb on - strand, within Dsui_2307at 2463.635 kb on + strand, within Dsui_2307at 2463.635 kb on + strand, within Dsui_2307at 2463.738 kb on - strand, within Dsui_2307at 2463.746 kb on + strand, within Dsui_2307at 2463.748 kb on - strand, within Dsui_2307at 2463.827 kb on + strand, within Dsui_2307at 2463.828 kb on + strand, within Dsui_2307at 2463.898 kb on - strand, within Dsui_2307at 2464.052 kb on + strandat 2464.060 kb on - strand, within Dsui_2307at 2464.130 kb on + strand, within Dsui_2307at 2464.132 kb on - strand, within Dsui_2307at 2464.169 kb on - strandat 2464.189 kb on + strandat 2464.189 kb on + strandat 2464.194 kb on + strandat 2464.197 kb on - strandat 2464.197 kb on - strandat 2464.202 kb on - strandat 2464.231 kb on - strandat 2464.302 kb on + strand, within Dsui_2308at 2464.304 kb on - strand, within Dsui_2308at 2464.315 kb on - strand, within Dsui_2308at 2464.467 kb on - strand, within Dsui_2308

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,462,045 + -0.3
2,462,061 - -1.1
2,462,089 - Dsui_2305 0.13 +0.0
2,462,210 - Dsui_2305 0.29 -0.9
2,462,272 - Dsui_2305 0.38 -1.5
2,462,311 - Dsui_2305 0.43 -0.4
2,462,439 - Dsui_2305 0.60 -0.9
2,462,458 - Dsui_2305 0.63 -0.9
2,462,690 + -0.7
2,462,747 + -0.1
2,462,747 + +0.6
2,462,755 - -0.5
2,462,755 - -0.4
2,462,755 - -0.6
2,462,755 - -0.6
2,462,755 - +0.1
2,462,788 + -1.0
2,462,796 - -0.7
2,462,806 + +0.2
2,462,814 - -0.6
2,462,814 - -0.4
2,462,820 + -0.8
2,462,828 - -0.2
2,462,830 + -0.5
2,462,838 - -0.3
2,462,870 - -0.9
2,463,108 + Dsui_2306 0.29 -2.9
2,463,116 - -0.5
2,463,126 - -0.3
2,463,126 - Dsui_2306 0.32 -2.5
2,463,138 + Dsui_2306 0.34 -1.2
2,463,227 + Dsui_2306 0.49 -1.1
2,463,340 + Dsui_2306 0.69 +0.6
2,463,405 + Dsui_2306 0.80 -0.8
2,463,413 - +0.0
2,463,628 - Dsui_2307 0.11 -0.1
2,463,635 + Dsui_2307 0.12 +0.7
2,463,635 + Dsui_2307 0.12 -0.2
2,463,738 - Dsui_2307 0.28 -0.2
2,463,746 + Dsui_2307 0.29 -1.0
2,463,748 - Dsui_2307 0.29 -0.2
2,463,827 + Dsui_2307 0.41 -0.5
2,463,828 + Dsui_2307 0.41 +0.8
2,463,898 - Dsui_2307 0.52 -1.3
2,464,052 + +2.0
2,464,060 - Dsui_2307 0.77 -1.4
2,464,130 + Dsui_2307 0.87 -1.4
2,464,132 - Dsui_2307 0.87 +0.1
2,464,169 - -0.4
2,464,189 + -0.1
2,464,189 + -0.3
2,464,194 + -0.5
2,464,197 - -0.7
2,464,197 - -0.5
2,464,202 - -0.8
2,464,231 - -0.3
2,464,302 + Dsui_2308 0.11 -1.2
2,464,304 - Dsui_2308 0.12 -1.0
2,464,315 - Dsui_2308 0.13 -1.2
2,464,467 - Dsui_2308 0.38 +0.2

Or see this region's nucleotide sequence