Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2304 and Dsui_2305 overlap by 1 nucleotides Dsui_2305 and Dsui_2306 are separated by 200 nucleotides Dsui_2306 and Dsui_2307 are separated by 31 nucleotides Dsui_2307 and Dsui_2308 are separated by 16 nucleotides
Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989
_2304
Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738
_2305
Dsui_2306: Dsui_2306 - transcriptional regulator, at 2,462,939 to 2,463,523
_2306
Dsui_2307: Dsui_2307 - putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component, at 2,463,555 to 2,464,214
_2307
Dsui_2308: Dsui_2308 - lysophospholipase L1-like esterase, at 2,464,231 to 2,464,854
_2308
Position (kb)
2462
2463
2464 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2462.045 kb on + strand at 2462.061 kb on - strand at 2462.089 kb on - strand, within Dsui_2305 at 2462.210 kb on - strand, within Dsui_2305 at 2462.272 kb on - strand, within Dsui_2305 at 2462.311 kb on - strand, within Dsui_2305 at 2462.439 kb on - strand, within Dsui_2305 at 2462.458 kb on - strand, within Dsui_2305 at 2462.690 kb on + strand at 2462.747 kb on + strand at 2462.747 kb on + strand at 2462.755 kb on - strand at 2462.755 kb on - strand at 2462.755 kb on - strand at 2462.755 kb on - strand at 2462.755 kb on - strand at 2462.788 kb on + strand at 2462.796 kb on - strand at 2462.806 kb on + strand at 2462.814 kb on - strand at 2462.814 kb on - strand at 2462.820 kb on + strand at 2462.828 kb on - strand at 2462.830 kb on + strand at 2462.838 kb on - strand at 2462.870 kb on - strand at 2463.108 kb on + strand, within Dsui_2306 at 2463.116 kb on - strand at 2463.126 kb on - strand at 2463.126 kb on - strand, within Dsui_2306 at 2463.138 kb on + strand, within Dsui_2306 at 2463.227 kb on + strand, within Dsui_2306 at 2463.340 kb on + strand, within Dsui_2306 at 2463.405 kb on + strand, within Dsui_2306 at 2463.413 kb on - strand at 2463.628 kb on - strand, within Dsui_2307 at 2463.635 kb on + strand, within Dsui_2307 at 2463.635 kb on + strand, within Dsui_2307 at 2463.738 kb on - strand, within Dsui_2307 at 2463.746 kb on + strand, within Dsui_2307 at 2463.748 kb on - strand, within Dsui_2307 at 2463.827 kb on + strand, within Dsui_2307 at 2463.828 kb on + strand, within Dsui_2307 at 2463.898 kb on - strand, within Dsui_2307 at 2464.052 kb on + strand at 2464.060 kb on - strand, within Dsui_2307 at 2464.130 kb on + strand, within Dsui_2307 at 2464.132 kb on - strand, within Dsui_2307 at 2464.169 kb on - strand at 2464.189 kb on + strand at 2464.189 kb on + strand at 2464.194 kb on + strand at 2464.197 kb on - strand at 2464.197 kb on - strand at 2464.202 kb on - strand at 2464.231 kb on - strand at 2464.302 kb on + strand, within Dsui_2308 at 2464.304 kb on - strand, within Dsui_2308 at 2464.315 kb on - strand, within Dsui_2308 at 2464.467 kb on - strand, within Dsui_2308
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,462,045 + -0.3 2,462,061 - -1.1 2,462,089 - Dsui_2305 0.13 +0.0 2,462,210 - Dsui_2305 0.29 -0.9 2,462,272 - Dsui_2305 0.38 -1.5 2,462,311 - Dsui_2305 0.43 -0.4 2,462,439 - Dsui_2305 0.60 -0.9 2,462,458 - Dsui_2305 0.63 -0.9 2,462,690 + -0.7 2,462,747 + -0.1 2,462,747 + +0.6 2,462,755 - -0.5 2,462,755 - -0.4 2,462,755 - -0.6 2,462,755 - -0.6 2,462,755 - +0.1 2,462,788 + -1.0 2,462,796 - -0.7 2,462,806 + +0.2 2,462,814 - -0.6 2,462,814 - -0.4 2,462,820 + -0.8 2,462,828 - -0.2 2,462,830 + -0.5 2,462,838 - -0.3 2,462,870 - -0.9 2,463,108 + Dsui_2306 0.29 -2.9 2,463,116 - -0.5 2,463,126 - -0.3 2,463,126 - Dsui_2306 0.32 -2.5 2,463,138 + Dsui_2306 0.34 -1.2 2,463,227 + Dsui_2306 0.49 -1.1 2,463,340 + Dsui_2306 0.69 +0.6 2,463,405 + Dsui_2306 0.80 -0.8 2,463,413 - +0.0 2,463,628 - Dsui_2307 0.11 -0.1 2,463,635 + Dsui_2307 0.12 +0.7 2,463,635 + Dsui_2307 0.12 -0.2 2,463,738 - Dsui_2307 0.28 -0.2 2,463,746 + Dsui_2307 0.29 -1.0 2,463,748 - Dsui_2307 0.29 -0.2 2,463,827 + Dsui_2307 0.41 -0.5 2,463,828 + Dsui_2307 0.41 +0.8 2,463,898 - Dsui_2307 0.52 -1.3 2,464,052 + +2.0 2,464,060 - Dsui_2307 0.77 -1.4 2,464,130 + Dsui_2307 0.87 -1.4 2,464,132 - Dsui_2307 0.87 +0.1 2,464,169 - -0.4 2,464,189 + -0.1 2,464,189 + -0.3 2,464,194 + -0.5 2,464,197 - -0.7 2,464,197 - -0.5 2,464,202 - -0.8 2,464,231 - -0.3 2,464,302 + Dsui_2308 0.11 -1.2 2,464,304 - Dsui_2308 0.12 -1.0 2,464,315 - Dsui_2308 0.13 -1.2 2,464,467 - Dsui_2308 0.38 +0.2
Or see this region's nucleotide sequence