Strain Fitness in Dechlorosoma suillum PS around Dsui_2174

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2172 and Dsui_2173 are separated by 172 nucleotidesDsui_2173 and Dsui_2174 are separated by 203 nucleotidesDsui_2174 and Dsui_2175 are separated by 113 nucleotides Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944 _2172 Dsui_2173: Dsui_2173 - peroxiredoxin, Ohr subfamily, at 2,309,117 to 2,309,542 _2173 Dsui_2174: Dsui_2174 - putative signal transduction protein, at 2,309,746 to 2,310,600 _2174 Dsui_2175: Dsui_2175 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,310,714 to 2,312,354 _2175 Position (kb) 2309 2310 2311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2308.849 kb on + strand, within Dsui_2172at 2308.957 kb on + strandat 2308.970 kb on + strandat 2309.060 kb on + strandat 2309.060 kb on + strandat 2309.078 kb on - strandat 2309.157 kb on - strandat 2309.199 kb on + strand, within Dsui_2173at 2309.329 kb on + strand, within Dsui_2173at 2309.356 kb on - strandat 2309.361 kb on - strandat 2309.536 kb on + strandat 2309.589 kb on + strandat 2309.627 kb on - strandat 2309.770 kb on - strandat 2309.781 kb on - strandat 2309.866 kb on + strandat 2309.866 kb on + strandat 2309.874 kb on - strand, within Dsui_2174at 2309.874 kb on - strand, within Dsui_2174at 2309.879 kb on - strand, within Dsui_2174at 2309.896 kb on + strand, within Dsui_2174at 2309.904 kb on - strand, within Dsui_2174at 2309.908 kb on + strand, within Dsui_2174at 2309.945 kb on - strand, within Dsui_2174at 2309.946 kb on + strandat 2309.989 kb on + strandat 2310.257 kb on + strandat 2310.265 kb on - strand, within Dsui_2174at 2310.265 kb on - strand, within Dsui_2174at 2310.305 kb on - strand, within Dsui_2174at 2310.415 kb on - strand, within Dsui_2174at 2310.451 kb on - strand, within Dsui_2174at 2310.501 kb on - strand, within Dsui_2174at 2310.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,308,849 + Dsui_2172 0.80 -1.1
2,308,957 + -0.4
2,308,970 + -1.0
2,309,060 + +0.4
2,309,060 + +1.0
2,309,078 - +1.0
2,309,157 - +2.0
2,309,199 + Dsui_2173 0.19 -0.3
2,309,329 + Dsui_2173 0.50 -1.9
2,309,356 - +0.4
2,309,361 - +2.0
2,309,536 + +0.5
2,309,589 + -0.6
2,309,627 - +1.0
2,309,770 - -0.0
2,309,781 - +0.3
2,309,866 + +1.0
2,309,866 + +2.0
2,309,874 - Dsui_2174 0.15 -0.2
2,309,874 - Dsui_2174 0.15 -0.2
2,309,879 - Dsui_2174 0.16 -0.4
2,309,896 + Dsui_2174 0.18 -1.3
2,309,904 - Dsui_2174 0.18 -0.5
2,309,908 + Dsui_2174 0.19 -1.4
2,309,945 - Dsui_2174 0.23 -0.4
2,309,946 + +0.4
2,309,989 + +0.4
2,310,257 + +1.0
2,310,265 - Dsui_2174 0.61 +0.3
2,310,265 - Dsui_2174 0.61 -0.4
2,310,305 - Dsui_2174 0.65 -3.1
2,310,415 - Dsui_2174 0.78 -0.1
2,310,451 - Dsui_2174 0.82 -0.6
2,310,501 - Dsui_2174 0.88 -1.2
2,310,617 - -0.8

Or see this region's nucleotide sequence