Strain Fitness in Dechlorosoma suillum PS around Dsui_2167

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2166 and Dsui_2167 are separated by 101 nucleotidesDsui_2167 and Dsui_2168 are separated by 61 nucleotides Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670 _2166 Dsui_2167: Dsui_2167 - TonB-dependent siderophore receptor, at 2,302,772 to 2,305,192 _2167 Dsui_2168: Dsui_2168 - putative hydrolase of alpha/beta superfamily, at 2,305,254 to 2,306,219 _2168 Position (kb) 2302 2303 2304 2305 2306Strain fitness (log2 ratio) -2 -1 0 1 2at 2301.906 kb on + strand, within Dsui_2166at 2301.931 kb on + strand, within Dsui_2166at 2301.939 kb on - strandat 2301.939 kb on - strandat 2302.360 kb on + strand, within Dsui_2166at 2302.431 kb on + strandat 2302.586 kb on + strandat 2302.622 kb on - strandat 2302.648 kb on + strandat 2302.666 kb on + strandat 2302.774 kb on + strandat 2302.782 kb on - strandat 2302.782 kb on - strandat 2302.832 kb on + strandat 2302.928 kb on + strandat 2303.099 kb on + strand, within Dsui_2167at 2303.100 kb on + strand, within Dsui_2167at 2303.264 kb on + strand, within Dsui_2167at 2303.411 kb on + strandat 2303.418 kb on + strandat 2303.456 kb on + strand, within Dsui_2167at 2303.499 kb on - strandat 2303.555 kb on + strand, within Dsui_2167at 2303.602 kb on - strandat 2303.609 kb on + strand, within Dsui_2167at 2303.646 kb on + strand, within Dsui_2167at 2303.789 kb on + strand, within Dsui_2167at 2303.944 kb on - strandat 2303.996 kb on + strand, within Dsui_2167at 2304.154 kb on + strandat 2304.195 kb on + strand, within Dsui_2167at 2304.195 kb on + strandat 2304.203 kb on - strandat 2304.203 kb on - strandat 2304.341 kb on - strandat 2304.358 kb on - strandat 2304.360 kb on - strand, within Dsui_2167at 2304.384 kb on + strand, within Dsui_2167at 2304.391 kb on - strandat 2304.515 kb on + strandat 2304.555 kb on - strandat 2304.555 kb on - strandat 2304.615 kb on - strandat 2304.685 kb on + strandat 2304.894 kb on + strandat 2304.900 kb on - strandat 2304.921 kb on + strandat 2304.923 kb on - strandat 2305.022 kb on - strandat 2305.107 kb on - strandat 2305.161 kb on + strandat 2305.191 kb on - strandat 2305.388 kb on + strandat 2305.596 kb on - strandat 2305.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,301,906 + Dsui_2166 0.18 -2.1
2,301,931 + Dsui_2166 0.21 -0.7
2,301,939 - +2.0
2,301,939 - +2.0
2,302,360 + Dsui_2166 0.67 -1.5
2,302,431 + +1.3
2,302,586 + +0.2
2,302,622 - +2.0
2,302,648 + -0.3
2,302,666 + +2.0
2,302,774 + +1.0
2,302,782 - +0.1
2,302,782 - -0.3
2,302,832 + -0.1
2,302,928 + -1.7
2,303,099 + Dsui_2167 0.14 -0.6
2,303,100 + Dsui_2167 0.14 +1.6
2,303,264 + Dsui_2167 0.20 +0.3
2,303,411 + +1.0
2,303,418 + +0.4
2,303,456 + Dsui_2167 0.28 +0.4
2,303,499 - +0.0
2,303,555 + Dsui_2167 0.32 +1.2
2,303,602 - +2.0
2,303,609 + Dsui_2167 0.35 +1.7
2,303,646 + Dsui_2167 0.36 -1.2
2,303,789 + Dsui_2167 0.42 +0.0
2,303,944 - +1.4
2,303,996 + Dsui_2167 0.51 +0.4
2,304,154 + +2.0
2,304,195 + Dsui_2167 0.59 -0.2
2,304,195 + +1.4
2,304,203 - +2.0
2,304,203 - +2.0
2,304,341 - +2.0
2,304,358 - +2.0
2,304,360 - Dsui_2167 0.66 -0.5
2,304,384 + Dsui_2167 0.67 +0.4
2,304,391 - +2.0
2,304,515 + +0.0
2,304,555 - +0.4
2,304,555 - +2.0
2,304,615 - +1.0
2,304,685 + +1.0
2,304,894 + +2.0
2,304,900 - +1.0
2,304,921 + +0.4
2,304,923 - +1.0
2,305,022 - +1.0
2,305,107 - +2.0
2,305,161 + +0.7
2,305,191 - -2.3
2,305,388 + +0.4
2,305,596 - +2.0
2,305,687 - +0.0

Or see this region's nucleotide sequence