Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2153 and Dsui_2154 are separated by 27 nucleotides Dsui_2154 and Dsui_2155 are separated by 269 nucleotides Dsui_2155 and Dsui_2156 are separated by 202 nucleotides
Dsui_2153: Dsui_2153 - molybdopterin converting factor, subunit 1, at 2,283,922 to 2,284,173
_2153
Dsui_2154: Dsui_2154 - molybdopterin converting factor, large subunit, at 2,284,201 to 2,284,662
_2154
Dsui_2155: Dsui_2155 - hypothetical protein, at 2,284,932 to 2,285,822
_2155
Dsui_2156: Dsui_2156 - methyl-accepting chemotaxis protein, at 2,286,025 to 2,287,665
_2156
Position (kb)
2284
2285
2286 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2283.966 kb on - strand, within Dsui_2153 at 2283.991 kb on + strand, within Dsui_2153 at 2284.104 kb on + strand, within Dsui_2153 at 2284.454 kb on - strand, within Dsui_2154 at 2284.462 kb on - strand, within Dsui_2154 at 2284.491 kb on + strand, within Dsui_2154 at 2284.793 kb on + strand at 2284.988 kb on + strand at 2285.062 kb on + strand, within Dsui_2155 at 2285.078 kb on - strand, within Dsui_2155 at 2285.107 kb on + strand at 2285.107 kb on + strand, within Dsui_2155 at 2285.161 kb on - strand, within Dsui_2155 at 2285.307 kb on - strand at 2285.358 kb on + strand, within Dsui_2155 at 2285.366 kb on - strand at 2285.502 kb on - strand, within Dsui_2155 at 2285.502 kb on - strand, within Dsui_2155 at 2285.502 kb on - strand, within Dsui_2155 at 2285.502 kb on - strand, within Dsui_2155 at 2285.502 kb on - strand, within Dsui_2155 at 2285.563 kb on + strand, within Dsui_2155 at 2285.621 kb on + strand, within Dsui_2155 at 2285.726 kb on + strand, within Dsui_2155 at 2285.763 kb on - strand at 2285.833 kb on + strand at 2285.962 kb on + strand at 2285.962 kb on + strand at 2285.962 kb on + strand at 2285.962 kb on + strand at 2285.962 kb on + strand at 2285.970 kb on - strand at 2285.970 kb on - strand at 2286.067 kb on + strand at 2286.132 kb on - strand at 2286.315 kb on + strand, within Dsui_2156 at 2286.315 kb on + strand, within Dsui_2156 at 2286.323 kb on - strand, within Dsui_2156 at 2286.356 kb on - strand, within Dsui_2156 at 2286.546 kb on + strand, within Dsui_2156 at 2286.559 kb on + strand, within Dsui_2156 at 2286.586 kb on + strand, within Dsui_2156 at 2286.594 kb on - strand, within Dsui_2156 at 2286.594 kb on - strand, within Dsui_2156 at 2286.634 kb on - strand, within Dsui_2156 at 2286.639 kb on - strand, within Dsui_2156 at 2286.659 kb on - strand, within Dsui_2156
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,283,966 - Dsui_2153 0.17 -4.5 2,283,991 + Dsui_2153 0.27 -2.5 2,284,104 + Dsui_2153 0.72 -3.7 2,284,454 - Dsui_2154 0.55 -2.4 2,284,462 - Dsui_2154 0.56 -1.4 2,284,491 + Dsui_2154 0.63 -3.7 2,284,793 + -1.0 2,284,988 + +0.1 2,285,062 + Dsui_2155 0.15 +0.9 2,285,078 - Dsui_2155 0.16 -1.3 2,285,107 + +1.4 2,285,107 + Dsui_2155 0.20 -0.3 2,285,161 - Dsui_2155 0.26 -2.0 2,285,307 - +2.0 2,285,358 + Dsui_2155 0.48 -0.6 2,285,366 - +0.4 2,285,502 - Dsui_2155 0.64 -0.6 2,285,502 - Dsui_2155 0.64 -0.1 2,285,502 - Dsui_2155 0.64 +1.6 2,285,502 - Dsui_2155 0.64 -1.5 2,285,502 - Dsui_2155 0.64 +0.1 2,285,563 + Dsui_2155 0.71 -0.6 2,285,621 + Dsui_2155 0.77 -0.5 2,285,726 + Dsui_2155 0.89 -1.1 2,285,763 - -0.9 2,285,833 + -0.1 2,285,962 + -0.4 2,285,962 + -0.0 2,285,962 + -0.3 2,285,962 + -0.3 2,285,962 + +0.0 2,285,970 - +0.5 2,285,970 - -0.7 2,286,067 + -0.9 2,286,132 - -0.3 2,286,315 + Dsui_2156 0.18 +0.3 2,286,315 + Dsui_2156 0.18 -0.7 2,286,323 - Dsui_2156 0.18 -0.6 2,286,356 - Dsui_2156 0.20 -0.6 2,286,546 + Dsui_2156 0.32 -1.0 2,286,559 + Dsui_2156 0.33 -1.8 2,286,586 + Dsui_2156 0.34 -0.3 2,286,594 - Dsui_2156 0.35 -0.1 2,286,594 - Dsui_2156 0.35 -0.6 2,286,634 - Dsui_2156 0.37 -0.0 2,286,639 - Dsui_2156 0.37 -0.3 2,286,659 - Dsui_2156 0.39 -0.3
Or see this region's nucleotide sequence