Strain Fitness in Dechlorosoma suillum PS around Dsui_2148

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2147 and Dsui_2148 are separated by 220 nucleotidesDsui_2148 and Dsui_2149 are separated by 201 nucleotides Dsui_2147: Dsui_2147 - DNA recombination-dependent growth factor C, at 2,274,621 to 2,275,523 _2147 Dsui_2148: Dsui_2148 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,275,744 to 2,278,623 _2148 Dsui_2149: Dsui_2149 - DNA helicase, Rad3, at 2,278,825 to 2,280,777 _2149 Position (kb) 2275 2276 2277 2278 2279Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2275.596 kb on - strandat 2275.596 kb on - strandat 2275.597 kb on - strandat 2275.748 kb on - strandat 2275.748 kb on - strandat 2275.748 kb on - strandat 2275.841 kb on + strandat 2275.964 kb on + strandat 2276.030 kb on - strandat 2276.087 kb on + strand, within Dsui_2148at 2276.095 kb on - strand, within Dsui_2148at 2276.095 kb on - strand, within Dsui_2148at 2276.111 kb on - strand, within Dsui_2148at 2276.111 kb on - strand, within Dsui_2148at 2276.141 kb on + strand, within Dsui_2148at 2276.159 kb on - strand, within Dsui_2148at 2276.215 kb on - strand, within Dsui_2148at 2276.391 kb on + strand, within Dsui_2148at 2276.424 kb on - strand, within Dsui_2148at 2276.785 kb on - strand, within Dsui_2148at 2276.882 kb on - strand, within Dsui_2148at 2276.944 kb on - strand, within Dsui_2148at 2276.954 kb on - strand, within Dsui_2148at 2277.098 kb on - strand, within Dsui_2148at 2277.159 kb on + strandat 2277.316 kb on + strandat 2277.406 kb on + strand, within Dsui_2148at 2277.421 kb on + strandat 2277.463 kb on + strand, within Dsui_2148at 2277.577 kb on - strand, within Dsui_2148at 2277.692 kb on + strand, within Dsui_2148at 2277.810 kb on + strandat 2277.888 kb on + strandat 2278.089 kb on + strand, within Dsui_2148at 2278.125 kb on + strand, within Dsui_2148at 2278.191 kb on + strandat 2278.307 kb on + strandat 2278.336 kb on - strandat 2278.363 kb on - strandat 2278.543 kb on - strandat 2278.565 kb on - strandat 2278.565 kb on - strandat 2278.631 kb on - strandat 2278.664 kb on + strandat 2279.015 kb on - strandat 2279.136 kb on + strand, within Dsui_2149at 2279.230 kb on + strand, within Dsui_2149at 2279.290 kb on + strand, within Dsui_2149at 2279.362 kb on + strand, within Dsui_2149at 2279.362 kb on + strand, within Dsui_2149at 2279.370 kb on - strandat 2279.370 kb on - strandat 2279.593 kb on + strand, within Dsui_2149

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,275,596 - -0.5
2,275,596 - -1.4
2,275,597 - -0.5
2,275,748 - -0.2
2,275,748 - -0.0
2,275,748 - -1.3
2,275,841 + -0.3
2,275,964 + -1.8
2,276,030 - -1.1
2,276,087 + Dsui_2148 0.12 -0.1
2,276,095 - Dsui_2148 0.12 -0.9
2,276,095 - Dsui_2148 0.12 -0.2
2,276,111 - Dsui_2148 0.13 -0.6
2,276,111 - Dsui_2148 0.13 -1.1
2,276,141 + Dsui_2148 0.14 -0.7
2,276,159 - Dsui_2148 0.14 +0.1
2,276,215 - Dsui_2148 0.16 -0.2
2,276,391 + Dsui_2148 0.22 -1.7
2,276,424 - Dsui_2148 0.24 -1.3
2,276,785 - Dsui_2148 0.36 -0.6
2,276,882 - Dsui_2148 0.40 -1.0
2,276,944 - Dsui_2148 0.42 -0.5
2,276,954 - Dsui_2148 0.42 -1.2
2,277,098 - Dsui_2148 0.47 -2.4
2,277,159 + +1.0
2,277,316 + -0.3
2,277,406 + Dsui_2148 0.58 -0.8
2,277,421 + +1.0
2,277,463 + Dsui_2148 0.60 -0.3
2,277,577 - Dsui_2148 0.64 -0.7
2,277,692 + Dsui_2148 0.68 -1.5
2,277,810 + +1.0
2,277,888 + +3.6
2,278,089 + Dsui_2148 0.81 +0.5
2,278,125 + Dsui_2148 0.83 +1.8
2,278,191 + +2.0
2,278,307 + -0.3
2,278,336 - -0.3
2,278,363 - -0.9
2,278,543 - +0.1
2,278,565 - -0.4
2,278,565 - -0.3
2,278,631 - -0.8
2,278,664 + +2.0
2,279,015 - +1.0
2,279,136 + Dsui_2149 0.16 +0.8
2,279,230 + Dsui_2149 0.21 -0.3
2,279,290 + Dsui_2149 0.24 -0.1
2,279,362 + Dsui_2149 0.27 -0.5
2,279,362 + Dsui_2149 0.27 -0.8
2,279,370 - -0.5
2,279,370 - +1.0
2,279,593 + Dsui_2149 0.39 -0.5

Or see this region's nucleotide sequence