Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2035 and Dsui_2036 are separated by 146 nucleotides Dsui_2036 and Dsui_2037 are separated by 65 nucleotides Dsui_2037 and Dsui_2038 are separated by 4 nucleotides Dsui_2038 and Dsui_2039 are separated by 227 nucleotides
Dsui_2035: Dsui_2035 - transcriptional regulator, at 2,155,185 to 2,156,147
_2035
Dsui_2036: Dsui_2036 - Protein of unknown function (DUF2917), at 2,156,294 to 2,156,650
_2036
Dsui_2037: Dsui_2037 - putative alpha/beta hydrolase, at 2,156,716 to 2,157,663
_2037
Dsui_2038: Dsui_2038 - putative regulatory protein, FmdB family, at 2,157,668 to 2,157,901
_2038
Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415
_2039
Position (kb)
2156
2157
2158 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2155.722 kb on - strand, within Dsui_2035 at 2155.803 kb on - strand, within Dsui_2035 at 2155.969 kb on - strand, within Dsui_2035 at 2155.972 kb on - strand, within Dsui_2035 at 2156.005 kb on - strand, within Dsui_2035 at 2156.011 kb on + strand, within Dsui_2035 at 2156.018 kb on - strand, within Dsui_2035 at 2156.018 kb on - strand, within Dsui_2035 at 2156.019 kb on - strand, within Dsui_2035 at 2156.119 kb on - strand at 2156.138 kb on - strand at 2156.149 kb on - strand at 2156.150 kb on - strand at 2156.154 kb on + strand at 2156.162 kb on + strand at 2156.784 kb on - strand at 2156.844 kb on - strand, within Dsui_2037 at 2156.869 kb on + strand, within Dsui_2037 at 2156.869 kb on + strand, within Dsui_2037 at 2156.869 kb on + strand at 2157.002 kb on - strand at 2157.022 kb on + strand, within Dsui_2037 at 2157.030 kb on - strand at 2157.030 kb on - strand, within Dsui_2037 at 2157.037 kb on + strand, within Dsui_2037 at 2157.111 kb on + strand, within Dsui_2037 at 2157.195 kb on - strand, within Dsui_2037 at 2157.323 kb on + strand, within Dsui_2037 at 2157.401 kb on + strand, within Dsui_2037 at 2157.421 kb on - strand, within Dsui_2037 at 2157.615 kb on - strand at 2157.630 kb on - strand at 2157.693 kb on + strand, within Dsui_2038 at 2157.694 kb on - strand, within Dsui_2038 at 2157.824 kb on + strand, within Dsui_2038 at 2157.832 kb on - strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.842 kb on - strand, within Dsui_2038 at 2157.853 kb on + strand, within Dsui_2038 at 2157.861 kb on - strand, within Dsui_2038 at 2157.872 kb on + strand, within Dsui_2038 at 2157.897 kb on + strand at 2157.903 kb on + strand at 2157.988 kb on + strand at 2158.014 kb on - strand at 2158.083 kb on + strand at 2158.083 kb on + strand at 2158.083 kb on - strand at 2158.091 kb on - strand at 2158.377 kb on + strand, within Dsui_2039 at 2158.411 kb on - strand, within Dsui_2039 at 2158.447 kb on + strand, within Dsui_2039 at 2158.458 kb on + strand, within Dsui_2039 at 2158.490 kb on + strand, within Dsui_2039 at 2158.542 kb on + strand, within Dsui_2039 at 2158.558 kb on - strand, within Dsui_2039 at 2158.559 kb on - strand, within Dsui_2039 at 2158.617 kb on - strand, within Dsui_2039
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,155,722 - Dsui_2035 0.56 -0.6 2,155,803 - Dsui_2035 0.64 +0.1 2,155,969 - Dsui_2035 0.81 -0.7 2,155,972 - Dsui_2035 0.82 -0.8 2,156,005 - Dsui_2035 0.85 -1.0 2,156,011 + Dsui_2035 0.86 -2.0 2,156,018 - Dsui_2035 0.87 -0.5 2,156,018 - Dsui_2035 0.87 -1.4 2,156,019 - Dsui_2035 0.87 -0.8 2,156,119 - -0.2 2,156,138 - -1.5 2,156,149 - -1.3 2,156,150 - +0.7 2,156,154 + -1.0 2,156,162 + +1.0 2,156,784 - +0.0 2,156,844 - Dsui_2037 0.14 -0.5 2,156,869 + Dsui_2037 0.16 -1.6 2,156,869 + Dsui_2037 0.16 -1.1 2,156,869 + -0.3 2,157,002 - -0.8 2,157,022 + Dsui_2037 0.32 -2.8 2,157,030 - +1.5 2,157,030 - Dsui_2037 0.33 -1.1 2,157,037 + Dsui_2037 0.34 -1.8 2,157,111 + Dsui_2037 0.42 -1.3 2,157,195 - Dsui_2037 0.51 +1.3 2,157,323 + Dsui_2037 0.64 +1.3 2,157,401 + Dsui_2037 0.72 -0.9 2,157,421 - Dsui_2037 0.74 -0.5 2,157,615 - +1.0 2,157,630 - -2.5 2,157,693 + Dsui_2038 0.11 -1.1 2,157,694 - Dsui_2038 0.11 -1.6 2,157,824 + Dsui_2038 0.67 -0.8 2,157,832 - Dsui_2038 0.70 -1.4 2,157,834 + Dsui_2038 0.71 -0.2 2,157,834 + Dsui_2038 0.71 -0.1 2,157,834 + Dsui_2038 0.71 -0.4 2,157,842 - Dsui_2038 0.74 -1.0 2,157,853 + Dsui_2038 0.79 -1.0 2,157,861 - Dsui_2038 0.82 -0.6 2,157,872 + Dsui_2038 0.87 -1.1 2,157,897 + -0.8 2,157,903 + -0.7 2,157,988 + +0.2 2,158,014 - +0.0 2,158,083 + -0.4 2,158,083 + -0.8 2,158,083 - -0.8 2,158,091 - -0.8 2,158,377 + Dsui_2039 0.19 -0.8 2,158,411 - Dsui_2039 0.22 +0.3 2,158,447 + Dsui_2039 0.25 +0.0 2,158,458 + Dsui_2039 0.26 +1.2 2,158,490 + Dsui_2039 0.28 -0.5 2,158,542 + Dsui_2039 0.32 -1.4 2,158,558 - Dsui_2039 0.33 -0.2 2,158,559 - Dsui_2039 0.33 -1.4 2,158,617 - Dsui_2039 0.38 -0.0
Or see this region's nucleotide sequence