Strain Fitness in Dechlorosoma suillum PS around Dsui_2037

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2035 and Dsui_2036 are separated by 146 nucleotidesDsui_2036 and Dsui_2037 are separated by 65 nucleotidesDsui_2037 and Dsui_2038 are separated by 4 nucleotidesDsui_2038 and Dsui_2039 are separated by 227 nucleotides Dsui_2035: Dsui_2035 - transcriptional regulator, at 2,155,185 to 2,156,147 _2035 Dsui_2036: Dsui_2036 - Protein of unknown function (DUF2917), at 2,156,294 to 2,156,650 _2036 Dsui_2037: Dsui_2037 - putative alpha/beta hydrolase, at 2,156,716 to 2,157,663 _2037 Dsui_2038: Dsui_2038 - putative regulatory protein, FmdB family, at 2,157,668 to 2,157,901 _2038 Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415 _2039 Position (kb) 2156 2157 2158Strain fitness (log2 ratio) -3 -2 -1 0 1at 2155.722 kb on - strand, within Dsui_2035at 2155.803 kb on - strand, within Dsui_2035at 2155.969 kb on - strand, within Dsui_2035at 2155.972 kb on - strand, within Dsui_2035at 2156.005 kb on - strand, within Dsui_2035at 2156.011 kb on + strand, within Dsui_2035at 2156.018 kb on - strand, within Dsui_2035at 2156.018 kb on - strand, within Dsui_2035at 2156.019 kb on - strand, within Dsui_2035at 2156.119 kb on - strandat 2156.138 kb on - strandat 2156.149 kb on - strandat 2156.150 kb on - strandat 2156.154 kb on + strandat 2156.162 kb on + strandat 2156.784 kb on - strandat 2156.844 kb on - strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strandat 2157.002 kb on - strandat 2157.022 kb on + strand, within Dsui_2037at 2157.030 kb on - strandat 2157.030 kb on - strand, within Dsui_2037at 2157.037 kb on + strand, within Dsui_2037at 2157.111 kb on + strand, within Dsui_2037at 2157.195 kb on - strand, within Dsui_2037at 2157.323 kb on + strand, within Dsui_2037at 2157.401 kb on + strand, within Dsui_2037at 2157.421 kb on - strand, within Dsui_2037at 2157.615 kb on - strandat 2157.630 kb on - strandat 2157.693 kb on + strand, within Dsui_2038at 2157.694 kb on - strand, within Dsui_2038at 2157.824 kb on + strand, within Dsui_2038at 2157.832 kb on - strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.834 kb on + strand, within Dsui_2038at 2157.842 kb on - strand, within Dsui_2038at 2157.853 kb on + strand, within Dsui_2038at 2157.861 kb on - strand, within Dsui_2038at 2157.872 kb on + strand, within Dsui_2038at 2157.897 kb on + strandat 2157.903 kb on + strandat 2157.988 kb on + strandat 2158.014 kb on - strandat 2158.083 kb on + strandat 2158.083 kb on + strandat 2158.083 kb on - strandat 2158.091 kb on - strandat 2158.377 kb on + strand, within Dsui_2039at 2158.411 kb on - strand, within Dsui_2039at 2158.447 kb on + strand, within Dsui_2039at 2158.458 kb on + strand, within Dsui_2039at 2158.490 kb on + strand, within Dsui_2039at 2158.542 kb on + strand, within Dsui_2039at 2158.558 kb on - strand, within Dsui_2039at 2158.559 kb on - strand, within Dsui_2039at 2158.617 kb on - strand, within Dsui_2039

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,155,722 - Dsui_2035 0.56 -0.6
2,155,803 - Dsui_2035 0.64 +0.1
2,155,969 - Dsui_2035 0.81 -0.7
2,155,972 - Dsui_2035 0.82 -0.8
2,156,005 - Dsui_2035 0.85 -1.0
2,156,011 + Dsui_2035 0.86 -2.0
2,156,018 - Dsui_2035 0.87 -0.5
2,156,018 - Dsui_2035 0.87 -1.4
2,156,019 - Dsui_2035 0.87 -0.8
2,156,119 - -0.2
2,156,138 - -1.5
2,156,149 - -1.3
2,156,150 - +0.7
2,156,154 + -1.0
2,156,162 + +1.0
2,156,784 - +0.0
2,156,844 - Dsui_2037 0.14 -0.5
2,156,869 + Dsui_2037 0.16 -1.6
2,156,869 + Dsui_2037 0.16 -1.1
2,156,869 + -0.3
2,157,002 - -0.8
2,157,022 + Dsui_2037 0.32 -2.8
2,157,030 - +1.5
2,157,030 - Dsui_2037 0.33 -1.1
2,157,037 + Dsui_2037 0.34 -1.8
2,157,111 + Dsui_2037 0.42 -1.3
2,157,195 - Dsui_2037 0.51 +1.3
2,157,323 + Dsui_2037 0.64 +1.3
2,157,401 + Dsui_2037 0.72 -0.9
2,157,421 - Dsui_2037 0.74 -0.5
2,157,615 - +1.0
2,157,630 - -2.5
2,157,693 + Dsui_2038 0.11 -1.1
2,157,694 - Dsui_2038 0.11 -1.6
2,157,824 + Dsui_2038 0.67 -0.8
2,157,832 - Dsui_2038 0.70 -1.4
2,157,834 + Dsui_2038 0.71 -0.2
2,157,834 + Dsui_2038 0.71 -0.1
2,157,834 + Dsui_2038 0.71 -0.4
2,157,842 - Dsui_2038 0.74 -1.0
2,157,853 + Dsui_2038 0.79 -1.0
2,157,861 - Dsui_2038 0.82 -0.6
2,157,872 + Dsui_2038 0.87 -1.1
2,157,897 + -0.8
2,157,903 + -0.7
2,157,988 + +0.2
2,158,014 - +0.0
2,158,083 + -0.4
2,158,083 + -0.8
2,158,083 - -0.8
2,158,091 - -0.8
2,158,377 + Dsui_2039 0.19 -0.8
2,158,411 - Dsui_2039 0.22 +0.3
2,158,447 + Dsui_2039 0.25 +0.0
2,158,458 + Dsui_2039 0.26 +1.2
2,158,490 + Dsui_2039 0.28 -0.5
2,158,542 + Dsui_2039 0.32 -1.4
2,158,558 - Dsui_2039 0.33 -0.2
2,158,559 - Dsui_2039 0.33 -1.4
2,158,617 - Dsui_2039 0.38 -0.0

Or see this region's nucleotide sequence