Strain Fitness in Dechlorosoma suillum PS around Dsui_2036

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2035 and Dsui_2036 are separated by 146 nucleotidesDsui_2036 and Dsui_2037 are separated by 65 nucleotides Dsui_2035: Dsui_2035 - transcriptional regulator, at 2,155,185 to 2,156,147 _2035 Dsui_2036: Dsui_2036 - Protein of unknown function (DUF2917), at 2,156,294 to 2,156,650 _2036 Dsui_2037: Dsui_2037 - putative alpha/beta hydrolase, at 2,156,716 to 2,157,663 _2037 Position (kb) 2156 2157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2155.318 kb on - strand, within Dsui_2035at 2155.343 kb on - strand, within Dsui_2035at 2155.346 kb on + strand, within Dsui_2035at 2155.401 kb on + strandat 2155.401 kb on + strand, within Dsui_2035at 2155.409 kb on - strand, within Dsui_2035at 2155.526 kb on + strandat 2155.530 kb on + strandat 2155.531 kb on + strandat 2155.618 kb on + strand, within Dsui_2035at 2155.661 kb on + strandat 2155.722 kb on - strand, within Dsui_2035at 2155.803 kb on - strand, within Dsui_2035at 2155.969 kb on - strand, within Dsui_2035at 2155.972 kb on - strand, within Dsui_2035at 2156.005 kb on - strand, within Dsui_2035at 2156.011 kb on + strand, within Dsui_2035at 2156.018 kb on - strand, within Dsui_2035at 2156.018 kb on - strand, within Dsui_2035at 2156.019 kb on - strand, within Dsui_2035at 2156.119 kb on - strandat 2156.138 kb on - strandat 2156.149 kb on - strandat 2156.150 kb on - strandat 2156.154 kb on + strandat 2156.162 kb on + strandat 2156.784 kb on - strandat 2156.844 kb on - strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strand, within Dsui_2037at 2156.869 kb on + strandat 2157.002 kb on - strandat 2157.022 kb on + strand, within Dsui_2037at 2157.030 kb on - strandat 2157.030 kb on - strand, within Dsui_2037at 2157.037 kb on + strand, within Dsui_2037at 2157.111 kb on + strand, within Dsui_2037at 2157.195 kb on - strand, within Dsui_2037at 2157.323 kb on + strand, within Dsui_2037at 2157.401 kb on + strand, within Dsui_2037at 2157.421 kb on - strand, within Dsui_2037at 2157.615 kb on - strandat 2157.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,155,318 - Dsui_2035 0.14 -1.1
2,155,343 - Dsui_2035 0.16 -0.5
2,155,346 + Dsui_2035 0.17 -1.8
2,155,401 + +1.5
2,155,401 + Dsui_2035 0.22 -1.5
2,155,409 - Dsui_2035 0.23 -0.4
2,155,526 + +0.5
2,155,530 + +0.5
2,155,531 + +2.0
2,155,618 + Dsui_2035 0.45 -1.3
2,155,661 + +2.0
2,155,722 - Dsui_2035 0.56 -0.6
2,155,803 - Dsui_2035 0.64 +0.1
2,155,969 - Dsui_2035 0.81 -0.7
2,155,972 - Dsui_2035 0.82 -0.8
2,156,005 - Dsui_2035 0.85 -1.0
2,156,011 + Dsui_2035 0.86 -2.0
2,156,018 - Dsui_2035 0.87 -0.5
2,156,018 - Dsui_2035 0.87 -1.4
2,156,019 - Dsui_2035 0.87 -0.8
2,156,119 - -0.2
2,156,138 - -1.5
2,156,149 - -1.3
2,156,150 - +0.7
2,156,154 + -1.0
2,156,162 + +1.0
2,156,784 - +0.0
2,156,844 - Dsui_2037 0.14 -0.5
2,156,869 + Dsui_2037 0.16 -1.6
2,156,869 + Dsui_2037 0.16 -1.1
2,156,869 + -0.3
2,157,002 - -0.8
2,157,022 + Dsui_2037 0.32 -2.8
2,157,030 - +1.5
2,157,030 - Dsui_2037 0.33 -1.1
2,157,037 + Dsui_2037 0.34 -1.8
2,157,111 + Dsui_2037 0.42 -1.3
2,157,195 - Dsui_2037 0.51 +1.3
2,157,323 + Dsui_2037 0.64 +1.3
2,157,401 + Dsui_2037 0.72 -0.9
2,157,421 - Dsui_2037 0.74 -0.5
2,157,615 - +1.0
2,157,630 - -2.5

Or see this region's nucleotide sequence