Strain Fitness in Dechlorosoma suillum PS around Dsui_1948

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1947 and Dsui_1948 are separated by 10 nucleotidesDsui_1948 and Dsui_1949 overlap by 14 nucleotidesDsui_1949 and Dsui_1950 overlap by 11 nucleotides Dsui_1947: Dsui_1947 - nucleotide sugar dehydrogenase, at 2,059,187 to 2,060,512 _1947 Dsui_1948: Dsui_1948 - dTDP-glucose 4,6-dehydratase, at 2,060,523 to 2,061,584 _1948 Dsui_1949: Dsui_1949 - dTDP-4-dehydrorhamnose reductase, at 2,061,571 to 2,062,500 _1949 Dsui_1950: Dsui_1950 - glucose-1-phosphate thymidylyltransferase, short form, at 2,062,490 to 2,063,380 _1950 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -1 0 1at 2060.241 kb on + strand, within Dsui_1947at 2060.303 kb on + strand, within Dsui_1947at 2060.356 kb on + strand, within Dsui_1947at 2060.415 kb on + strandat 2060.495 kb on + strandat 2061.551 kb on + strandat 2061.579 kb on + strandat 2062.075 kb on + strand, within Dsui_1949at 2062.451 kb on - strandat 2062.483 kb on + strandat 2062.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,060,241 + Dsui_1947 0.79 +1.0
2,060,303 + Dsui_1947 0.84 +0.4
2,060,356 + Dsui_1947 0.88 -1.5
2,060,415 + -0.3
2,060,495 + +0.1
2,061,551 + +0.0
2,061,579 + -0.8
2,062,075 + Dsui_1949 0.54 -0.3
2,062,451 - +0.4
2,062,483 + -0.2
2,062,483 + -1.1

Or see this region's nucleotide sequence