Strain Fitness in Dechlorosoma suillum PS around Dsui_1931

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1930 and Dsui_1931 overlap by 8 nucleotidesDsui_1931 and Dsui_1932 are separated by 166 nucleotides Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322 _1930 Dsui_1931: Dsui_1931 - transcriptional regulator, at 2,041,315 to 2,041,821 _1931 Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491 _1932 Position (kb) 2041 2042Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2040.323 kb on + strandat 2040.348 kb on + strandat 2040.438 kb on - strand, within Dsui_1930at 2040.527 kb on + strand, within Dsui_1930at 2040.565 kb on + strand, within Dsui_1930at 2040.570 kb on + strand, within Dsui_1930at 2040.595 kb on + strand, within Dsui_1930at 2040.601 kb on - strand, within Dsui_1930at 2040.793 kb on + strand, within Dsui_1930at 2040.803 kb on + strand, within Dsui_1930at 2040.816 kb on - strandat 2040.905 kb on - strandat 2040.905 kb on - strandat 2040.936 kb on + strand, within Dsui_1930at 2040.986 kb on + strand, within Dsui_1930at 2040.994 kb on - strand, within Dsui_1930at 2041.018 kb on - strand, within Dsui_1930at 2041.042 kb on - strand, within Dsui_1930at 2041.253 kb on - strandat 2041.278 kb on + strandat 2041.297 kb on + strandat 2041.317 kb on + strandat 2041.527 kb on + strand, within Dsui_1931at 2041.553 kb on - strandat 2041.579 kb on - strandat 2041.637 kb on - strandat 2041.651 kb on + strand, within Dsui_1931at 2041.659 kb on - strand, within Dsui_1931at 2041.663 kb on + strand, within Dsui_1931at 2041.765 kb on + strand, within Dsui_1931at 2041.773 kb on - strandat 2041.773 kb on - strandat 2041.786 kb on + strandat 2041.796 kb on - strandat 2041.825 kb on - strandat 2041.831 kb on - strandat 2041.914 kb on - strandat 2041.919 kb on - strandat 2041.958 kb on - strandat 2042.187 kb on - strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.502 kb on - strandat 2042.512 kb on - strandat 2042.545 kb on - strandat 2042.570 kb on + strandat 2042.570 kb on + strandat 2042.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,040,323 + -4.0
2,040,348 + -2.5
2,040,438 - Dsui_1930 0.14 -0.5
2,040,527 + Dsui_1930 0.23 -4.9
2,040,565 + Dsui_1930 0.26 -2.0
2,040,570 + Dsui_1930 0.27 -3.6
2,040,595 + Dsui_1930 0.29 -2.8
2,040,601 - Dsui_1930 0.30 -2.0
2,040,793 + Dsui_1930 0.48 -2.3
2,040,803 + Dsui_1930 0.49 -2.2
2,040,816 - +1.0
2,040,905 - +2.0
2,040,905 - +2.0
2,040,936 + Dsui_1930 0.62 -1.5
2,040,986 + Dsui_1930 0.67 -1.6
2,040,994 - Dsui_1930 0.68 +0.0
2,041,018 - Dsui_1930 0.70 -0.3
2,041,042 - Dsui_1930 0.73 +0.4
2,041,253 - +1.4
2,041,278 + -1.3
2,041,297 + -0.4
2,041,317 + -0.8
2,041,527 + Dsui_1931 0.42 -3.0
2,041,553 - +2.0
2,041,579 - -0.6
2,041,637 - +0.4
2,041,651 + Dsui_1931 0.66 -3.0
2,041,659 - Dsui_1931 0.68 -3.0
2,041,663 + Dsui_1931 0.69 -2.3
2,041,765 + Dsui_1931 0.89 -2.6
2,041,773 - -1.0
2,041,773 - +0.4
2,041,786 + -2.9
2,041,796 - -1.9
2,041,825 - -0.1
2,041,831 - -0.3
2,041,914 - -0.7
2,041,919 - +1.0
2,041,958 - +0.3
2,042,187 - Dsui_1932 0.39 -1.7
2,042,214 + Dsui_1932 0.45 -0.9
2,042,214 + Dsui_1932 0.45 -2.0
2,042,406 - Dsui_1932 0.83 -2.9
2,042,406 - Dsui_1932 0.83 -2.6
2,042,406 - Dsui_1932 0.83 -1.8
2,042,502 - -2.2
2,042,512 - -0.6
2,042,545 - -0.5
2,042,570 + -0.3
2,042,570 + -0.4
2,042,578 - -0.9

Or see this region's nucleotide sequence