Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1868 and Dsui_1869 are separated by 322 nucleotides Dsui_1869 and Dsui_1870 are separated by 130 nucleotides
Dsui_1868: Dsui_1868 - HD-GYP domain-containing protein, at 1,964,363 to 1,965,607
_1868
Dsui_1869: Dsui_1869 - hypothetical protein, at 1,965,930 to 1,966,208
_1869
Dsui_1870: Dsui_1870 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 1,966,339 to 1,967,841
_1870
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1964.940 kb on + strand, within Dsui_1868 at 1964.948 kb on - strand at 1964.985 kb on - strand, within Dsui_1868 at 1965.020 kb on - strand, within Dsui_1868 at 1965.024 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.200 kb on + strand, within Dsui_1868 at 1965.233 kb on + strand, within Dsui_1868 at 1965.268 kb on + strand, within Dsui_1868 at 1965.277 kb on - strand, within Dsui_1868 at 1965.392 kb on + strand, within Dsui_1868 at 1965.443 kb on - strand at 1965.708 kb on - strand at 1965.712 kb on + strand at 1965.753 kb on - strand at 1965.872 kb on + strand at 1965.920 kb on + strand at 1965.944 kb on + strand at 1965.961 kb on + strand, within Dsui_1869 at 1966.004 kb on + strand, within Dsui_1869 at 1966.083 kb on + strand, within Dsui_1869 at 1966.113 kb on + strand, within Dsui_1869 at 1966.349 kb on + strand at 1966.349 kb on + strand at 1966.432 kb on - strand at 1966.436 kb on + strand at 1966.459 kb on + strand at 1966.468 kb on + strand at 1966.494 kb on + strand, within Dsui_1870 at 1966.564 kb on + strand, within Dsui_1870 at 1966.686 kb on - strand, within Dsui_1870 at 1966.724 kb on + strand, within Dsui_1870 at 1966.724 kb on + strand at 1966.724 kb on + strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.734 kb on + strand, within Dsui_1870 at 1966.872 kb on + strand, within Dsui_1870 at 1966.872 kb on + strand, within Dsui_1870 at 1966.880 kb on - strand, within Dsui_1870 at 1966.884 kb on - strand, within Dsui_1870 at 1967.100 kb on + strand, within Dsui_1870 at 1967.116 kb on - strand, within Dsui_1870 at 1967.197 kb on + strand, within Dsui_1870 at 1967.205 kb on - strand, within Dsui_1870
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,964,940 + Dsui_1868 0.46 +0.4 1,964,948 - +1.0 1,964,985 - Dsui_1868 0.50 +0.6 1,965,020 - Dsui_1868 0.53 -1.3 1,965,024 + Dsui_1868 0.53 -0.9 1,965,085 + Dsui_1868 0.58 +0.6 1,965,085 + Dsui_1868 0.58 +0.4 1,965,200 + Dsui_1868 0.67 -0.1 1,965,233 + Dsui_1868 0.70 +0.3 1,965,268 + Dsui_1868 0.73 +0.5 1,965,277 - Dsui_1868 0.73 +0.9 1,965,392 + Dsui_1868 0.83 -0.8 1,965,443 - -0.5 1,965,708 - +1.2 1,965,712 + -0.8 1,965,753 - +0.0 1,965,872 + -0.3 1,965,920 + +0.0 1,965,944 + -0.9 1,965,961 + Dsui_1869 0.11 +0.2 1,966,004 + Dsui_1869 0.27 +0.4 1,966,083 + Dsui_1869 0.55 +0.4 1,966,113 + Dsui_1869 0.66 +0.3 1,966,349 + -0.3 1,966,349 + -0.5 1,966,432 - +0.0 1,966,436 + +0.2 1,966,459 + +0.3 1,966,468 + +0.0 1,966,494 + Dsui_1870 0.10 -2.0 1,966,564 + Dsui_1870 0.15 -1.0 1,966,686 - Dsui_1870 0.23 -0.6 1,966,724 + Dsui_1870 0.26 +0.3 1,966,724 + +3.0 1,966,724 + Dsui_1870 0.26 +0.5 1,966,732 - Dsui_1870 0.26 -2.0 1,966,732 - Dsui_1870 0.26 +0.2 1,966,732 - Dsui_1870 0.26 -0.7 1,966,734 + Dsui_1870 0.26 -0.3 1,966,872 + Dsui_1870 0.35 +0.2 1,966,872 + Dsui_1870 0.35 -1.6 1,966,880 - Dsui_1870 0.36 -0.8 1,966,884 - Dsui_1870 0.36 -0.3 1,967,100 + Dsui_1870 0.51 -0.8 1,967,116 - Dsui_1870 0.52 -0.8 1,967,197 + Dsui_1870 0.57 -1.8 1,967,205 - Dsui_1870 0.58 -0.1
Or see this region's nucleotide sequence