Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1830 and Dsui_1831 are separated by 520 nucleotides Dsui_1831 and Dsui_1832 are separated by 148 nucleotides
Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304
_1830
Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102
_1831
Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141
_1832
Position (kb)
1929
1930
1931
1932 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1928.843 kb on + strand, within Dsui_1830 at 1928.929 kb on + strand, within Dsui_1830 at 1928.931 kb on - strand, within Dsui_1830 at 1929.010 kb on - strand at 1929.232 kb on - strand, within Dsui_1830 at 1929.274 kb on + strand at 1929.292 kb on + strand at 1929.347 kb on + strand at 1929.501 kb on + strand at 1929.516 kb on + strand at 1929.550 kb on + strand at 1929.648 kb on + strand at 1929.685 kb on + strand at 1929.713 kb on - strand at 1929.720 kb on + strand at 1929.728 kb on - strand at 1929.728 kb on - strand at 1929.809 kb on + strand at 1930.165 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand, within Dsui_1831 at 1930.169 kb on + strand at 1930.248 kb on + strand, within Dsui_1831 at 1930.248 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.299 kb on + strand, within Dsui_1831 at 1930.304 kb on + strand at 1930.357 kb on - strand, within Dsui_1831 at 1930.405 kb on + strand at 1930.449 kb on + strand, within Dsui_1831 at 1930.497 kb on - strand, within Dsui_1831 at 1930.573 kb on - strand, within Dsui_1831 at 1930.710 kb on + strand, within Dsui_1831 at 1930.739 kb on - strand at 1930.805 kb on - strand, within Dsui_1831 at 1930.811 kb on - strand, within Dsui_1831 at 1930.905 kb on + strand, within Dsui_1831 at 1930.938 kb on - strand, within Dsui_1831 at 1930.948 kb on + strand at 1930.970 kb on - strand at 1931.031 kb on - strand at 1931.031 kb on - strand at 1931.091 kb on - strand at 1931.106 kb on - strand at 1931.144 kb on + strand at 1931.156 kb on + strand at 1931.390 kb on - strand at 1931.570 kb on + strand, within Dsui_1832 at 1931.765 kb on - strand at 1931.809 kb on - strand, within Dsui_1832 at 1931.845 kb on - strand at 1931.863 kb on + strand at 1931.889 kb on + strand, within Dsui_1832 at 1931.905 kb on + strand, within Dsui_1832 at 1932.003 kb on - strand, within Dsui_1832 at 1932.030 kb on + strand, within Dsui_1832 at 1932.079 kb on - strand at 1932.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,928,843 + Dsui_1830 0.23 +0.7 1,928,929 + Dsui_1830 0.37 -0.6 1,928,931 - Dsui_1830 0.38 +0.4 1,929,010 - +0.4 1,929,232 - Dsui_1830 0.88 -0.3 1,929,274 + -0.8 1,929,292 + +0.1 1,929,347 + +0.1 1,929,501 + +2.0 1,929,516 + -1.2 1,929,550 + +0.4 1,929,648 + -0.6 1,929,685 + -1.2 1,929,713 - +0.4 1,929,720 + -0.2 1,929,728 - +0.2 1,929,728 - -0.8 1,929,809 + +1.3 1,930,165 + Dsui_1831 0.27 +0.9 1,930,169 + Dsui_1831 0.27 +0.2 1,930,169 + +0.0 1,930,248 + Dsui_1831 0.33 +0.5 1,930,248 + Dsui_1831 0.33 +0.2 1,930,274 + Dsui_1831 0.35 +1.3 1,930,274 + Dsui_1831 0.35 -0.6 1,930,299 + Dsui_1831 0.37 -2.3 1,930,304 + +0.0 1,930,357 - Dsui_1831 0.42 +0.2 1,930,405 + +0.8 1,930,449 + Dsui_1831 0.49 +0.7 1,930,497 - Dsui_1831 0.53 +1.1 1,930,573 - Dsui_1831 0.59 +0.1 1,930,710 + Dsui_1831 0.69 +0.2 1,930,739 - +0.0 1,930,805 - Dsui_1831 0.77 -1.3 1,930,811 - Dsui_1831 0.77 +1.0 1,930,905 + Dsui_1831 0.85 -0.2 1,930,938 - Dsui_1831 0.87 -0.6 1,930,948 + +1.0 1,930,970 - +1.0 1,931,031 - +2.0 1,931,031 - +0.2 1,931,091 - +3.6 1,931,106 - +0.2 1,931,144 + +1.0 1,931,156 + -0.2 1,931,390 - +1.0 1,931,570 + Dsui_1832 0.36 -0.3 1,931,765 - +1.0 1,931,809 - Dsui_1832 0.63 -0.2 1,931,845 - +2.0 1,931,863 + +2.0 1,931,889 + Dsui_1832 0.72 +0.4 1,931,905 + Dsui_1832 0.73 -0.5 1,932,003 - Dsui_1832 0.84 +1.0 1,932,030 + Dsui_1832 0.87 +0.1 1,932,079 - +0.0 1,932,098 + +0.4
Or see this region's nucleotide sequence