Strain Fitness in Dechlorosoma suillum PS around Dsui_1831

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1830 and Dsui_1831 are separated by 520 nucleotidesDsui_1831 and Dsui_1832 are separated by 148 nucleotides Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304 _1830 Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102 _1831 Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141 _1832 Position (kb) 1929 1930 1931 1932Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1928.843 kb on + strand, within Dsui_1830at 1928.929 kb on + strand, within Dsui_1830at 1928.931 kb on - strand, within Dsui_1830at 1929.010 kb on - strandat 1929.232 kb on - strand, within Dsui_1830at 1929.274 kb on + strandat 1929.292 kb on + strandat 1929.347 kb on + strandat 1929.501 kb on + strandat 1929.516 kb on + strandat 1929.550 kb on + strandat 1929.648 kb on + strandat 1929.685 kb on + strandat 1929.713 kb on - strandat 1929.720 kb on + strandat 1929.728 kb on - strandat 1929.728 kb on - strandat 1929.809 kb on + strandat 1930.165 kb on + strand, within Dsui_1831at 1930.169 kb on + strand, within Dsui_1831at 1930.169 kb on + strandat 1930.248 kb on + strand, within Dsui_1831at 1930.248 kb on + strand, within Dsui_1831at 1930.274 kb on + strand, within Dsui_1831at 1930.274 kb on + strand, within Dsui_1831at 1930.299 kb on + strand, within Dsui_1831at 1930.304 kb on + strandat 1930.357 kb on - strand, within Dsui_1831at 1930.405 kb on + strandat 1930.449 kb on + strand, within Dsui_1831at 1930.497 kb on - strand, within Dsui_1831at 1930.573 kb on - strand, within Dsui_1831at 1930.710 kb on + strand, within Dsui_1831at 1930.739 kb on - strandat 1930.805 kb on - strand, within Dsui_1831at 1930.811 kb on - strand, within Dsui_1831at 1930.905 kb on + strand, within Dsui_1831at 1930.938 kb on - strand, within Dsui_1831at 1930.948 kb on + strandat 1930.970 kb on - strandat 1931.031 kb on - strandat 1931.031 kb on - strandat 1931.091 kb on - strandat 1931.106 kb on - strandat 1931.144 kb on + strandat 1931.156 kb on + strandat 1931.390 kb on - strandat 1931.570 kb on + strand, within Dsui_1832at 1931.765 kb on - strandat 1931.809 kb on - strand, within Dsui_1832at 1931.845 kb on - strandat 1931.863 kb on + strandat 1931.889 kb on + strand, within Dsui_1832at 1931.905 kb on + strand, within Dsui_1832at 1932.003 kb on - strand, within Dsui_1832at 1932.030 kb on + strand, within Dsui_1832at 1932.079 kb on - strandat 1932.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,928,843 + Dsui_1830 0.23 +0.7
1,928,929 + Dsui_1830 0.37 -0.6
1,928,931 - Dsui_1830 0.38 +0.4
1,929,010 - +0.4
1,929,232 - Dsui_1830 0.88 -0.3
1,929,274 + -0.8
1,929,292 + +0.1
1,929,347 + +0.1
1,929,501 + +2.0
1,929,516 + -1.2
1,929,550 + +0.4
1,929,648 + -0.6
1,929,685 + -1.2
1,929,713 - +0.4
1,929,720 + -0.2
1,929,728 - +0.2
1,929,728 - -0.8
1,929,809 + +1.3
1,930,165 + Dsui_1831 0.27 +0.9
1,930,169 + Dsui_1831 0.27 +0.2
1,930,169 + +0.0
1,930,248 + Dsui_1831 0.33 +0.5
1,930,248 + Dsui_1831 0.33 +0.2
1,930,274 + Dsui_1831 0.35 +1.3
1,930,274 + Dsui_1831 0.35 -0.6
1,930,299 + Dsui_1831 0.37 -2.3
1,930,304 + +0.0
1,930,357 - Dsui_1831 0.42 +0.2
1,930,405 + +0.8
1,930,449 + Dsui_1831 0.49 +0.7
1,930,497 - Dsui_1831 0.53 +1.1
1,930,573 - Dsui_1831 0.59 +0.1
1,930,710 + Dsui_1831 0.69 +0.2
1,930,739 - +0.0
1,930,805 - Dsui_1831 0.77 -1.3
1,930,811 - Dsui_1831 0.77 +1.0
1,930,905 + Dsui_1831 0.85 -0.2
1,930,938 - Dsui_1831 0.87 -0.6
1,930,948 + +1.0
1,930,970 - +1.0
1,931,031 - +2.0
1,931,031 - +0.2
1,931,091 - +3.6
1,931,106 - +0.2
1,931,144 + +1.0
1,931,156 + -0.2
1,931,390 - +1.0
1,931,570 + Dsui_1832 0.36 -0.3
1,931,765 - +1.0
1,931,809 - Dsui_1832 0.63 -0.2
1,931,845 - +2.0
1,931,863 + +2.0
1,931,889 + Dsui_1832 0.72 +0.4
1,931,905 + Dsui_1832 0.73 -0.5
1,932,003 - Dsui_1832 0.84 +1.0
1,932,030 + Dsui_1832 0.87 +0.1
1,932,079 - +0.0
1,932,098 + +0.4

Or see this region's nucleotide sequence